{"id":"https://openalex.org/W2104882528","doi":"https://doi.org/10.1145/1458082.1458277","title":"Passage relevance models for genomics search","display_name":"Passage relevance models for genomics search","publication_year":2008,"publication_date":"2008-10-26","ids":{"openalex":"https://openalex.org/W2104882528","doi":"https://doi.org/10.1145/1458082.1458277","mag":"2104882528"},"language":"en","primary_location":{"id":"doi:10.1145/1458082.1458277","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1458082.1458277","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM conference on Information and knowledge management","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034725251","display_name":"Jay Urbain","orcid":null},"institutions":[{"id":"https://openalex.org/I50702494","display_name":"Milwaukee School of Engineering","ror":"https://ror.org/04h7cfr36","country_code":"US","type":"education","lineage":["https://openalex.org/I50702494"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jay Urbain","raw_affiliation_strings":["Milwaukee School of Engineering, Milwaukee, WI, USA","Milwaukee School of Engineering, Milwaukee , WI, USA"],"affiliations":[{"raw_affiliation_string":"Milwaukee School of Engineering, Milwaukee, WI, USA","institution_ids":["https://openalex.org/I50702494"]},{"raw_affiliation_string":"Milwaukee School of Engineering, Milwaukee , WI, USA","institution_ids":["https://openalex.org/I50702494"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062591304","display_name":"Ophir Frieder","orcid":"https://orcid.org/0000-0001-5076-8171"},"institutions":[{"id":"https://openalex.org/I180949307","display_name":"Illinois Institute of Technology","ror":"https://ror.org/037t3ry66","country_code":"US","type":"education","lineage":["https://openalex.org/I180949307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ophir Frieder","raw_affiliation_strings":["Illinois Institute of Technology, Chicago, IL, USA","[Illinois Institute of Technology, Chicago, IL, USA.]"],"affiliations":[{"raw_affiliation_string":"Illinois Institute of Technology, Chicago, IL, USA","institution_ids":["https://openalex.org/I180949307"]},{"raw_affiliation_string":"[Illinois Institute of Technology, Chicago, IL, USA.]","institution_ids":["https://openalex.org/I180949307"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036610566","display_name":"Nazli Goharian","orcid":null},"institutions":[{"id":"https://openalex.org/I180949307","display_name":"Illinois Institute of Technology","ror":"https://ror.org/037t3ry66","country_code":"US","type":"education","lineage":["https://openalex.org/I180949307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nazli Goharian","raw_affiliation_strings":["Illinois Institute of Technology, Chicago, IL, USA","[Illinois Institute of Technology, Chicago, IL, USA.]"],"affiliations":[{"raw_affiliation_string":"Illinois Institute of Technology, Chicago, IL, USA","institution_ids":["https://openalex.org/I180949307"]},{"raw_affiliation_string":"[Illinois Institute of Technology, Chicago, IL, USA.]","institution_ids":["https://openalex.org/I180949307"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5034725251"],"corresponding_institution_ids":["https://openalex.org/I50702494"],"apc_list":null,"apc_paid":null,"fwci":0.1347,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.54736229,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":93},"biblio":{"volume":null,"issue":null,"first_page":"1357","last_page":"1358"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7671408653259277},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.752153754234314},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6506344079971313},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.6410583853721619},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5553457140922546},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4529503881931305},{"id":"https://openalex.org/keywords/graphical-model","display_name":"Graphical model","score":0.43774721026420593},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.4313100278377533},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4260309934616089},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.4162726104259491},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.41226834058761597},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3435800075531006},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.251309335231781},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11297538876533508}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7671408653259277},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.752153754234314},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6506344079971313},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.6410583853721619},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5553457140922546},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4529503881931305},{"id":"https://openalex.org/C155846161","wikidata":"https://www.wikidata.org/wiki/Q1143367","display_name":"Graphical model","level":2,"score":0.43774721026420593},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.4313100278377533},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4260309934616089},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.4162726104259491},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.41226834058761597},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3435800075531006},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.251309335231781},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11297538876533508},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1458082.1458277","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1458082.1458277","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM conference on Information and knowledge management","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7699999809265137,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W63206467","https://openalex.org/W184905683","https://openalex.org/W1508412218","https://openalex.org/W1514997941","https://openalex.org/W1522989131","https://openalex.org/W1991154713","https://openalex.org/W1997138240","https://openalex.org/W2019509999","https://openalex.org/W2040004971","https://openalex.org/W2042980227","https://openalex.org/W2044746110","https://openalex.org/W2045313021","https://openalex.org/W2048045485","https://openalex.org/W2070740689","https://openalex.org/W2077428231","https://openalex.org/W2078739211","https://openalex.org/W2096411881","https://openalex.org/W2098162425","https://openalex.org/W2103201239","https://openalex.org/W2130395434","https://openalex.org/W2132094268","https://openalex.org/W2153383890","https://openalex.org/W2153702481","https://openalex.org/W2153927559","https://openalex.org/W2158150544","https://openalex.org/W2160746453","https://openalex.org/W2169213601","https://openalex.org/W2203835818","https://openalex.org/W2331182131","https://openalex.org/W2334889010","https://openalex.org/W2917915395","https://openalex.org/W2979401726","https://openalex.org/W6678356393","https://openalex.org/W6703074907"],"related_works":["https://openalex.org/W3024364549","https://openalex.org/W4206019083","https://openalex.org/W2048865712","https://openalex.org/W1976265003","https://openalex.org/W2370378377","https://openalex.org/W4237510188","https://openalex.org/W2130160813","https://openalex.org/W2109986081","https://openalex.org/W2054476758","https://openalex.org/W4286900141"],"abstract_inverted_index":{"We":[0],"present":[1],"a":[2,23,41,49,54,88,136],"passage":[3,50,121],"relevance":[4],"model":[5,69],"for":[6,94],"integrating":[7,103],"semantic":[8],"and":[9,15,33,45,83,87,99,113],"statistical":[10],"evidence":[11,107],"of":[12,22,29,48,71,81,97,106],"biomedical":[13],"concepts":[14,82],"topics":[16,84],"in":[17,85,132],"context":[18],"using":[19,135],"the":[20,46,61],"framework":[21],"probabilistic":[24],"graphical":[25],"model.":[26],"Component":[27],"models":[28],"topics,":[30,111],"concepts,":[31,112],"terms,":[32,114],"document":[34],"are":[35],"represented":[36,59],"as":[37,60],"potential":[38,66],"functions":[39],"within":[40],"Markov":[42],"Random":[43],"Field,":[44],"probability":[47],"being":[51],"relevant":[52],"to":[53,77,117],"biologist's":[55],"information":[56],"need":[57],"is":[58,75,92],"joint":[62],"distribution":[63],"across":[64],"all":[65],"functions.":[67],"Relevance":[68],"feedback":[70],"top":[72],"ranked":[73],"passages":[74],"used":[76,93],"improve":[78,118],"distributional":[79],"estimates":[80],"context,":[86],"dimensional":[89],"indexing":[90],"strategy":[91],"efficient":[95],"aggregation":[96],"concept":[98],"term":[100],"statistics.":[101],"By":[102],"multiple":[104],"sources":[105],"including":[108],"dependencies":[109],"between":[110],"we":[115,127],"seek":[116],"genomics":[119,138],"literature":[120,139],"retrieval":[122,133],"precision.":[123],"Using":[124],"this":[125],"model,":[126],"demonstrate":[128],"statistically":[129],"significant":[130],"improvements":[131],"precision":[134],"large":[137],"corpus.":[140]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
