{"id":"https://openalex.org/W2089769699","doi":"https://doi.org/10.1145/1451940.1451981","title":"A spot-matching framework for improving matching accuracy in protein 2-DE gel image analysis","display_name":"A spot-matching framework for improving matching accuracy in protein 2-DE gel image analysis","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W2089769699","doi":"https://doi.org/10.1145/1451940.1451981","mag":"2089769699"},"language":"en","primary_location":{"id":"doi:10.1145/1451940.1451981","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1451940.1451981","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2008 international symposium on Database engineering &amp; applications - IDEAS '08","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075624025","display_name":"Jung Eun Shim","orcid":"https://orcid.org/0000-0001-6341-9923"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Jung Eun Shim","raw_affiliation_strings":["Yonsei University, Shinchon-dong Seodaemun-gu Seoul, Korea","Yonsei University, Shinchon-dong, Seodaemun-gu Seoul, Korea#TAB#"],"affiliations":[{"raw_affiliation_string":"Yonsei University, Shinchon-dong Seodaemun-gu Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]},{"raw_affiliation_string":"Yonsei University, Shinchon-dong, Seodaemun-gu Seoul, Korea#TAB#","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103575040","display_name":"Yanhua Jin","orcid":null},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Yanhua Jin","raw_affiliation_strings":["Yonsei University, Shinchon-dong Seodaemun-gu Seoul, Korea","Yonsei University, Shinchon-dong, Seodaemun-gu Seoul, Korea#TAB#"],"affiliations":[{"raw_affiliation_string":"Yonsei University, Shinchon-dong Seodaemun-gu Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]},{"raw_affiliation_string":"Yonsei University, Shinchon-dong, Seodaemun-gu Seoul, Korea#TAB#","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100745328","display_name":"Won Suk Lee","orcid":"https://orcid.org/0000-0003-2753-5294"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Won Suk Lee","raw_affiliation_strings":["Yonsei University, Shinchon-dong Seodaemun-gu Seoul, Korea","Yonsei University, Shinchon-dong, Seodaemun-gu Seoul, Korea#TAB#"],"affiliations":[{"raw_affiliation_string":"Yonsei University, Shinchon-dong Seodaemun-gu Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]},{"raw_affiliation_string":"Yonsei University, Shinchon-dong, Seodaemun-gu Seoul, Korea#TAB#","institution_ids":["https://openalex.org/I193775966"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5075624025"],"corresponding_institution_ids":["https://openalex.org/I193775966"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06905222,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"285","last_page":"285"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.7438710927963257},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7320927381515503},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6873959898948669},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.6194723844528198},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.5717936754226685},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5553028583526611},{"id":"https://openalex.org/keywords/landmark","display_name":"Landmark","score":0.54995197057724},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5396594405174255},{"id":"https://openalex.org/keywords/template-matching","display_name":"Template matching","score":0.4971983730792999},{"id":"https://openalex.org/keywords/pattern-matching","display_name":"Pattern matching","score":0.47724032402038574},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19393852353096008},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.0634407103061676}],"concepts":[{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.7438710927963257},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7320927381515503},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6873959898948669},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.6194723844528198},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.5717936754226685},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5553028583526611},{"id":"https://openalex.org/C2780297707","wikidata":"https://www.wikidata.org/wiki/Q4895393","display_name":"Landmark","level":2,"score":0.54995197057724},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5396594405174255},{"id":"https://openalex.org/C158096908","wikidata":"https://www.wikidata.org/wiki/Q3983303","display_name":"Template matching","level":3,"score":0.4971983730792999},{"id":"https://openalex.org/C68859911","wikidata":"https://www.wikidata.org/wiki/Q1503724","display_name":"Pattern matching","level":2,"score":0.47724032402038574},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19393852353096008},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0634407103061676},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1451940.1451981","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1451940.1451981","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2008 international symposium on Database engineering &amp; applications - IDEAS '08","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1530595269","https://openalex.org/W2003496022","https://openalex.org/W2010204605","https://openalex.org/W2132216082","https://openalex.org/W2146934839","https://openalex.org/W2161574105"],"related_works":["https://openalex.org/W2056853153","https://openalex.org/W1177578751","https://openalex.org/W2943461603","https://openalex.org/W2802511870","https://openalex.org/W2372581239","https://openalex.org/W3210429500","https://openalex.org/W3217252310","https://openalex.org/W2372466827","https://openalex.org/W4286894112","https://openalex.org/W2112802553"],"abstract_inverted_index":{"The":[0,98],"two-dimensional":[1],"electrophoresis":[2],"(2-DE)":[3],"method":[4],"is":[5,77,130,167],"widely":[6],"used":[7],"in":[8,15,38,57,117,144],"proteomics":[9],"to":[10,51,89,132,150],"separate":[11],"thousands":[12],"of":[13,21,24,34,75,93,111,121,155,163,177],"proteins":[14],"a":[16,19,28,58,86,108,125],"sample.":[17],"Given":[18],"set":[20,120],"gel":[22,41,46,60,95,122,175],"images":[23,47,176],"the":[25,32,35,73,91,118,140,145,152,160,164],"same":[26,36],"kind,":[27],"spot-matching":[29,76,87,136],"operation":[30],"identifies":[31],"spot":[33],"protein":[37],"each":[39],"2-DE":[40,45,59,94,174],"image.":[42],"However,":[43],"since":[44],"are":[48],"very":[49],"sensitive":[50],"various":[52,170],"experimental":[53],"conditions,":[54],"spots":[55,143],"observed":[56],"image":[61,96],"involve":[62],"inherent":[63],"errors":[64],"such":[65],"as":[66],"noises":[67],"and":[68,113],"irregular":[69],"geometric":[70],"distortions.":[71],"Consequently,":[72],"accuracy":[74,92,162],"intensively":[78],"influenced":[79],"by":[80],"these":[81,157],"errors.":[82],"This":[83],"paper":[84],"proposes":[85],"framework":[88,99,166],"improve":[90],"analysis.":[97],"includes":[100],"an":[101],"automatic":[102],"landmark":[103,142],"extraction":[104],"module":[105,129],"that":[106],"uses":[107],"pattern":[109],"model":[110],"positional":[112],"intensive":[114],"distortions":[115],"identified":[116],"learning":[119],"images.":[123],"Subsequently,":[124],"probabilistic":[126],"matching":[127],"adjustment":[128],"employed":[131],"produce":[133],"more":[134],"reliable":[135],"results":[137],"based":[138],"on":[139,172],"selected":[141],"first":[146],"module.":[147],"In":[148],"order":[149],"confirm":[151],"synergy":[153],"effects":[154],"integrating":[156],"two":[158],"modules,":[159],"improved":[161],"proposed":[165],"analyzed":[168],"through":[169],"experiments":[171],"real":[173],"human":[178],"liver":[179],"tissue.":[180]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
