{"id":"https://openalex.org/W2022796817","doi":"https://doi.org/10.1145/1401890.1402004","title":"Anticipating annotations and emerging trends in biomedical literature","display_name":"Anticipating annotations and emerging trends in biomedical literature","publication_year":2008,"publication_date":"2008-08-24","ids":{"openalex":"https://openalex.org/W2022796817","doi":"https://doi.org/10.1145/1401890.1402004","mag":"2022796817"},"language":"en","primary_location":{"id":"doi:10.1145/1401890.1402004","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1401890.1402004","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 14th ACM SIGKDD international conference on Knowledge discovery and data mining","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061385983","display_name":"Fabian M\u00f6rchen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137693","display_name":"Siemens (United States)","ror":"https://ror.org/04axb7e79","country_code":"US","type":"company","lineage":["https://openalex.org/I1325886976","https://openalex.org/I4210137693"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Fabian M\u00f6rchen","raw_affiliation_strings":["Siemens Corporate Research, Princeton, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Siemens Corporate Research, Princeton, NJ, USA","institution_ids":["https://openalex.org/I4210137693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060509789","display_name":"Math\u00e4us Dejori","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137693","display_name":"Siemens (United States)","ror":"https://ror.org/04axb7e79","country_code":"US","type":"company","lineage":["https://openalex.org/I1325886976","https://openalex.org/I4210137693"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Math\u00e4us Dejori","raw_affiliation_strings":["Siemens Corporate Research, Princeton, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Siemens Corporate Research, Princeton, NJ, USA","institution_ids":["https://openalex.org/I4210137693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065665055","display_name":"Dmitriy Fradkin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137693","display_name":"Siemens (United States)","ror":"https://ror.org/04axb7e79","country_code":"US","type":"company","lineage":["https://openalex.org/I1325886976","https://openalex.org/I4210137693"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dmitriy Fradkin","raw_affiliation_strings":["Siemens Corporate Research, Princeton, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Siemens Corporate Research, Princeton, NJ, USA","institution_ids":["https://openalex.org/I4210137693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064193564","display_name":"Julien \u00c9tienne","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137693","display_name":"Siemens (United States)","ror":"https://ror.org/04axb7e79","country_code":"US","type":"company","lineage":["https://openalex.org/I1325886976","https://openalex.org/I4210137693"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julien Etienne","raw_affiliation_strings":["Siemens Corporate Research, Princeton, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Siemens Corporate Research, Princeton, NJ, USA","institution_ids":["https://openalex.org/I4210137693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016285995","display_name":"Bernd Wachmann","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137693","display_name":"Siemens (United States)","ror":"https://ror.org/04axb7e79","country_code":"US","type":"company","lineage":["https://openalex.org/I1325886976","https://openalex.org/I4210137693"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bernd Wachmann","raw_affiliation_strings":["Siemens Corporate Research, Princeton, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Siemens Corporate Research, Princeton, NJ, USA","institution_ids":["https://openalex.org/I4210137693"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082847743","display_name":"Markus Bundschus","orcid":"https://orcid.org/0009-0002-5861-2758"},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Markus Bundschus","raw_affiliation_strings":["Ludwig-Maximilians-University, Munich, Germany","Ludwig- Maximilians-University Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Ludwig-Maximilians-University, Munich, Germany","institution_ids":["https://openalex.org/I8204097"]},{"raw_affiliation_string":"Ludwig- Maximilians-University Munich, Germany","institution_ids":["https://openalex.org/I8204097"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5061385983"],"corresponding_institution_ids":["https://openalex.org/I4210137693"],"apc_list":null,"apc_paid":null,"fwci":2.2126,"has_fulltext":false,"cited_by_count":47,"citation_normalized_percentile":{"value":0.87252144,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"954","last_page":"962"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/automatic-summarization","display_name":"Automatic summarization","score":0.8267411589622498},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8230167627334595},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7389309406280518},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6744920015335083},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6522846817970276},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5881381034851074},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5537324547767639},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5328508019447327},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5016582012176514},{"id":"https://openalex.org/keywords/topic-model","display_name":"Topic model","score":0.4175444543361664},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4101717472076416},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2819509208202362},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13906195759773254}],"concepts":[{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.8267411589622498},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8230167627334595},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7389309406280518},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6744920015335083},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6522846817970276},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5881381034851074},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5537324547767639},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5328508019447327},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5016582012176514},{"id":"https://openalex.org/C171686336","wikidata":"https://www.wikidata.org/wiki/Q3532085","display_name":"Topic model","level":2,"score":0.4175444543361664},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4101717472076416},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2819509208202362},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13906195759773254},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/1401890.1402004","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1401890.1402004","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 14th ACM SIGKDD international conference on Knowledge discovery and data mining","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.452.7406","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.452.7406","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://mybytes-de.timeseriesknowledgemining.org/papers/moerchen08anticipating.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1506993959","https://openalex.org/W1509894598","https://openalex.org/W1547561528","https://openalex.org/W1550206324","https://openalex.org/W1574901103","https://openalex.org/W1612003148","https://openalex.org/W1660390307","https://openalex.org/W1775632939","https://openalex.org/W1880262756","https://openalex.org/W2001082470","https://openalex.org/W2005492507","https://openalex.org/W2020842694","https://openalex.org/W2026302857","https://openalex.org/W2040466507","https://openalex.org/W2047221353","https://openalex.org/W2084241297","https://openalex.org/W2086704137","https://openalex.org/W2098162425","https://openalex.org/W2098401485","https://openalex.org/W2098620296","https://openalex.org/W2109154616","https://openalex.org/W2113625351","https://openalex.org/W2123551262","https://openalex.org/W2134731454","https://openalex.org/W2144212226","https://openalex.org/W2163679724","https://openalex.org/W2171343266","https://openalex.org/W2613214602","https://openalex.org/W4248892431","https://openalex.org/W6632663641","https://openalex.org/W6636440780","https://openalex.org/W6637101025","https://openalex.org/W6681242987"],"related_works":["https://openalex.org/W2366403280","https://openalex.org/W1495108544","https://openalex.org/W3148229873","https://openalex.org/W4242223894","https://openalex.org/W2091301346","https://openalex.org/W2150160875","https://openalex.org/W1517524280","https://openalex.org/W4306886878","https://openalex.org/W4323520239","https://openalex.org/W402673672"],"abstract_inverted_index":{"The":[0,195,206],"BioJournalMonitor":[1],"is":[2,21,103,131,204],"a":[3,159,180,226],"decision":[4],"support":[5],"system":[6,214],"for":[7,29,165,219],"the":[8,15,40,64,88,100,107,111,118,121,126,149,186,192,220],"analysis":[9,89],"of":[10,63,90,93,120,128,188,201],"trends":[11,203,223],"and":[12,26,77,96],"topics":[13],"in":[14,48,191,212],"biomedical":[16],"literature.":[17],"Its":[18],"main":[19],"goal":[20],"to":[22,38,57,87,105,144,184,215,225],"identify":[23],"potential":[24],"diagnostic":[25],"therapeutic":[27],"biomarkers":[28],"specific":[30],"diseases.":[31],"Several":[32],"data":[33],"sources":[34],"are":[35,55,85,169,174,210],"continuously":[36],"integrated":[37],"provide":[39,58],"user":[41],"with":[42,114,148,158],"up-to-date":[43],"information":[44],"on":[45,61,182],"current":[46],"research":[47],"this":[49],"field.":[50],"State-of-the-art":[51],"text":[52,94],"mining":[53],"technologies":[54,83],"deployed":[56,211],"added":[59],"value":[60],"top":[62],"original":[65],"content,":[66],"including":[67],"named":[68],"entity":[69],"detection,":[70],"relation":[71],"extraction,":[72],"classification,":[73],"clustering,":[74],"ranking,":[75],"summarization,":[76],"visualization.":[78],"We":[79,135,177],"present":[80,179],"two":[81],"novel":[82],"that":[84,198],"related":[86],"temporal":[91],"dynamics":[92],"archives":[95],"associated":[97],"ontologies.":[98],"Currently,":[99],"MeSH":[101,152,166,193],"ontology":[102,122],"used":[104,143],"annotate":[106,145],"scientific":[108],"articles":[109,130,147,168],"entering":[110],"PubMed":[112],"database":[113],"medical":[115],"terms.":[116,153],"Both":[117],"maintenance":[119],"as":[123,125],"well":[124],"annotation":[127],"new":[129,189,222],"performed":[132],"largely":[133],"manually.":[134],"describe":[136],"how":[137,183],"probabilistic":[138],"topic":[139],"models":[140],"can":[141],"be":[142],"recent":[146],"most":[150],"likely":[151],"This":[154],"provides":[155],"our":[156,213],"users":[157],"competitive":[160],"advantage":[161],"because,":[162],"when":[163],"searching":[164],"terms,":[167],"found":[170],"long":[171],"before":[172],"they":[173],"manually":[175],"annotated.":[176],"further":[178],"study":[181],"predict":[185],"inclusion":[187],"terms":[190],"ontology.":[194],"results":[196],"suggest":[197],"early":[199],"prediction":[200],"emerging":[202],"possible.":[205],"trend":[207],"ranking":[208],"functions":[209],"enable":[216],"interactive":[217],"searches":[218],"hottest":[221],"relating":[224],"disease.":[227]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
