{"id":"https://openalex.org/W1989773644","doi":"https://doi.org/10.1145/1388969.1388973","title":"Multiple sequence alignment using a GLOCSA guided genetic algorithm","display_name":"Multiple sequence alignment using a GLOCSA guided genetic algorithm","publication_year":2008,"publication_date":"2008-07-12","ids":{"openalex":"https://openalex.org/W1989773644","doi":"https://doi.org/10.1145/1388969.1388973","mag":"1989773644"},"language":"en","primary_location":{"id":"doi:10.1145/1388969.1388973","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1388969.1388973","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 10th annual conference companion on Genetic and evolutionary computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005773985","display_name":"Edgar David Arenas-D\u00edaz","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Edgar David Arenas-D\u00edaz","raw_affiliation_strings":["IIMAS - UNAM, Mexico City, Mexico","IIMAS, UNAM, Mexico City, Mexico#TAB#"],"affiliations":[{"raw_affiliation_string":"IIMAS - UNAM, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]},{"raw_affiliation_string":"IIMAS, UNAM, Mexico City, Mexico#TAB#","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080705211","display_name":"Helga Ochoterena","orcid":"https://orcid.org/0000-0002-3830-4603"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Helga Ochoterena-Booth","raw_affiliation_strings":["Instituto de Biolog\u00eda - UNAM, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Instituto de Biolog\u00eda - UNAM, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030786098","display_name":"Katya Rodr\u00edguez\u2010V\u00e1zquez","orcid":"https://orcid.org/0000-0002-9413-2762"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Katya Rodr\u00edguez-V\u00e1zquez","raw_affiliation_strings":["IIMAS - UNAM, Mexico City, Mexico","IIMAS, UNAM, Mexico City, Mexico#TAB#"],"affiliations":[{"raw_affiliation_string":"IIMAS - UNAM, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]},{"raw_affiliation_string":"IIMAS, UNAM, Mexico City, Mexico#TAB#","institution_ids":["https://openalex.org/I8961855"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5005773985"],"corresponding_institution_ids":["https://openalex.org/I8961855"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06741812,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1795","last_page":"1798"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9122999906539917,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.7516714930534363},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6914354562759399},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.6649401187896729},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.638731837272644},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.6201526522636414},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6178860068321228},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.5732879042625427},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.5236989259719849},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4750618636608124},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4307061433792114},{"id":"https://openalex.org/keywords/maximum-parsimony","display_name":"Maximum parsimony","score":0.4108327031135559},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.32181957364082336},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2606283128261566},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.18271198868751526},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0877341628074646},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07791048288345337},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.060410529375076294}],"concepts":[{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.7516714930534363},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6914354562759399},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.6649401187896729},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.638731837272644},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.6201526522636414},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6178860068321228},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.5732879042625427},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.5236989259719849},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4750618636608124},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4307061433792114},{"id":"https://openalex.org/C22799545","wikidata":"https://www.wikidata.org/wiki/Q1805805","display_name":"Maximum parsimony","level":5,"score":0.4108327031135559},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.32181957364082336},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2606283128261566},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.18271198868751526},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0877341628074646},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07791048288345337},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.060410529375076294},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1388969.1388973","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1388969.1388973","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 10th annual conference companion on Genetic and evolutionary computation","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321739","display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda","ror":"https://ror.org/059ex5q34"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1702013544","https://openalex.org/W2054698853","https://openalex.org/W2074231493","https://openalex.org/W2102122585","https://openalex.org/W2102941368","https://openalex.org/W2132926880","https://openalex.org/W2163860567"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2133116680","https://openalex.org/W2111937814","https://openalex.org/W2141411672","https://openalex.org/W2091678889","https://openalex.org/W1482324242","https://openalex.org/W187239587","https://openalex.org/W88386512","https://openalex.org/W2730968108","https://openalex.org/W4386770652"],"abstract_inverted_index":{"This":[0],"paper":[1],"introduces":[2],"GLOCSA":[3,35],"as":[4],"a":[5,34],"new":[6],"scoring":[7],"function":[8],"to":[9,17,43],"rate":[10],"multiple":[11],"sequence":[12],"alignments.":[13],"It":[14],"is":[15,39],"intended":[16],"be":[18],"simple,":[19],"considering":[20],"the":[21,28],"whole":[22],"alignment":[23],"at":[24],"once":[25],"and":[26],"reflecting":[27],"parsimony":[29],"of":[30],"an":[31],"alignment.":[32],"Then,":[33],"Guided":[36],"Genetic":[37],"Algorithm":[38],"proposed":[40],"in":[41,56],"order":[42],"refine":[44],"alignments":[45],"previously":[46],"generated":[47],"by":[48],"MUSCLE.":[49],"The":[50],"results":[51],"so":[52],"far":[53],"are":[54],"depicted":[55],"this":[57],"paper.":[58]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}