{"id":"https://openalex.org/W2010075076","doi":"https://doi.org/10.1145/1383529.1383535","title":"SWARM","display_name":"SWARM","publication_year":2008,"publication_date":"2008-06-23","ids":{"openalex":"https://openalex.org/W2010075076","doi":"https://doi.org/10.1145/1383529.1383535","mag":"2010075076"},"language":"en","primary_location":{"id":"doi:10.1145/1383529.1383535","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1383529.1383535","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th international workshop on Challenges of large applications in distributed environments","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103054154","display_name":"Xinghua Shi","orcid":"https://orcid.org/0000-0003-4662-3177"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinghua Shi","raw_affiliation_strings":["University of Chicago, Chicago, IL, USA","University of Chicago , Chicago, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Chicago, Chicago, IL, USA","institution_ids":["https://openalex.org/I39422238","https://openalex.org/I40347166"]},{"raw_affiliation_string":"University of Chicago , Chicago, IL, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053682943","display_name":"Rick Stevens","orcid":"https://orcid.org/0000-0002-4268-4020"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rick Stevens","raw_affiliation_strings":["Argonne National Laboratory, Argonne, IL, USA",", Argonne National Laboratory, Argonne, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, Argonne, IL, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":", Argonne National Laboratory, Argonne, IL, USA","institution_ids":["https://openalex.org/I1282105669"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.8456,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.73639431,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"25","last_page":"34"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7313335537910461},{"id":"https://openalex.org/keywords/swarm-behaviour","display_name":"Swarm behaviour","score":0.7201040387153625},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.635883092880249},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5200995206832886},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4810488522052765},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4452809989452362},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4360380172729492},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.307537317276001},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1204937994480133},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.09274929761886597}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7313335537910461},{"id":"https://openalex.org/C181335050","wikidata":"https://www.wikidata.org/wiki/Q14915018","display_name":"Swarm behaviour","level":2,"score":0.7201040387153625},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.635883092880249},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5200995206832886},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4810488522052765},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4452809989452362},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4360380172729492},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.307537317276001},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1204937994480133},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.09274929761886597},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1383529.1383535","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1383529.1383535","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th international workshop on Challenges of large applications in distributed environments","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/8","display_name":"Decent work and economic growth","score":0.6200000047683716}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1480333175","https://openalex.org/W1526508038","https://openalex.org/W1543388089","https://openalex.org/W1603241183","https://openalex.org/W1814099126","https://openalex.org/W1970072150","https://openalex.org/W1983324622","https://openalex.org/W1983833794","https://openalex.org/W1992306474","https://openalex.org/W1994326726","https://openalex.org/W1996791690","https://openalex.org/W2042938763","https://openalex.org/W2048214825","https://openalex.org/W2062245653","https://openalex.org/W2079048673","https://openalex.org/W2079531107","https://openalex.org/W2086016524","https://openalex.org/W2091257550","https://openalex.org/W2096245011","https://openalex.org/W2097588479","https://openalex.org/W2104108767","https://openalex.org/W2107523227","https://openalex.org/W2111031006","https://openalex.org/W2113329733","https://openalex.org/W2114034054","https://openalex.org/W2122638857","https://openalex.org/W2123060905","https://openalex.org/W2127020923","https://openalex.org/W2128548442","https://openalex.org/W2128572161","https://openalex.org/W2133298156","https://openalex.org/W2147472054","https://openalex.org/W2148190806","https://openalex.org/W2153373497","https://openalex.org/W2157635835","https://openalex.org/W2159482845","https://openalex.org/W2163855763","https://openalex.org/W2170427655","https://openalex.org/W2172143128","https://openalex.org/W4238101851"],"related_works":["https://openalex.org/W4288714711","https://openalex.org/W3200708550","https://openalex.org/W2736680465","https://openalex.org/W2771637876","https://openalex.org/W4294093918","https://openalex.org/W4240853094","https://openalex.org/W2810496283","https://openalex.org/W2170656329","https://openalex.org/W3131977017","https://openalex.org/W3205823858"],"abstract_inverted_index":{"With":[0],"the":[1,8,59,106,125,151,155,171],"exponential":[2],"growth":[3],"of":[4,10,54,72,103,108,143,157,173,190],"complete":[5],"genome":[6,73],"sequences,":[7],"analysis":[9],"these":[11],"sequences":[12,74],"is":[13,48],"becoming":[14],"a":[15,83,101,141,187],"powerful":[16],"approach":[17],"to":[18,28,70,90,139,149,159,180],"build":[19],"genome-scale":[20,44,64,92,183],"metabolic":[21,45,65,93,167,174,184],"models.":[22],"These":[23],"models":[24,46,66,94,185],"can":[25,87],"be":[26,88],"used":[27],"study":[29,38],"individual":[30],"molecular":[31],"components":[32],"and":[33,36,50,118,145,163,192],"their":[34],"relationships,":[35],"eventually":[37,164],"cells":[39],"as":[40],"systems.":[41],"However,":[42],"constructing":[43],"manually":[47],"time-consuming":[49],"labor-intensive.":[51],"This":[52],"property":[53],"manual":[55],"model-building":[56],"process":[57,128],"causes":[58],"fact":[60],"that":[61,86,129],"much":[62],"fewer":[63],"are":[67],"available":[68],"comparing":[69],"hundreds":[71],"available.":[75],"To":[76],"tackle":[77],"this":[78],"problem,":[79],"we":[80],"design":[81],"SWARM,":[82],"scientific":[84],"workflow":[85],"utilized":[89],"improve":[91],"in":[95],"high-throughput":[96],"fashion.":[97],"SWARM":[98,123,177],"deals":[99],"with":[100,193],"range":[102],"issues":[104],"including":[105],"integration":[107],"data":[109,113,116,119,132],"across":[110],"distributed":[111],"resources,":[112,135],"format":[114],"conversions,":[115],"update,":[117],"provenance.":[120],"Putting":[121],"altogether,":[122],"streamlines":[124],"whole":[126],"modeling":[127],"includes":[130],"extracting":[131],"from":[133],"various":[134],"deriving":[136],"training":[137],"datasets":[138],"train":[140],"set":[142],"predictors":[144,158],"applying":[146],"Bayesian":[147],"techniques":[148],"assemble":[150],"predictors,":[152],"inferring":[153],"on":[154],"ensemble":[156],"insert":[160],"missing":[161],"data,":[162],"improving":[165],"draft":[166],"networks":[168],"automatically.":[169],"By":[170],"enhancement":[172],"model":[175],"construction,":[176],"enables":[178],"scientists":[179],"generate":[181],"many":[182],"within":[186],"short":[188],"period":[189],"time":[191],"less":[194],"effort.":[195]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2016-06-24T00:00:00"}