{"id":"https://openalex.org/W2004283554","doi":"https://doi.org/10.1145/1375783.1375812","title":"PBB","display_name":"PBB","publication_year":2007,"publication_date":"2007-11-11","ids":{"openalex":"https://openalex.org/W2004283554","doi":"https://doi.org/10.1145/1375783.1375812","mag":"2004283554"},"language":"en","primary_location":{"id":"doi:10.1145/1375783.1375812","is_oa":true,"landing_page_url":"https://doi.org/10.1145/1375783.1375812","pdf_url":"https://dl.acm.org/action/downloadSupplement?doi=10.1145%2F1375783.1375812&file=p141-chen.pdf","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2007 Asian technology information program's (ATIP's) 3rd workshop on High performance computing in China: solution approaches to impediments for high performance computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/action/downloadSupplement?doi=10.1145%2F1375783.1375812&file=p141-chen.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103141832","display_name":"Wenguang Chen","orcid":"https://orcid.org/0000-0002-4281-1018"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenguang Chen","raw_affiliation_strings":["Tsinghua University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tsinghua University","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055553785","display_name":"Chuntao Hong","orcid":"https://orcid.org/0009-0009-3472-6102"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chuntao Hong","raw_affiliation_strings":["Tsinghua University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tsinghua University","institution_ids":["https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.08687903,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"141","last_page":"144"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.968999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.965499997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.7980899810791016},{"id":"https://openalex.org/keywords/citation","display_name":"Citation","score":0.7799355983734131},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6948019862174988},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5579986572265625},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4199313521385193},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3608444333076477},{"id":"https://openalex.org/keywords/history","display_name":"History","score":0.06462568044662476},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.058051884174346924}],"concepts":[{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.7980899810791016},{"id":"https://openalex.org/C2778805511","wikidata":"https://www.wikidata.org/wiki/Q1713","display_name":"Citation","level":2,"score":0.7799355983734131},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6948019862174988},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5579986572265625},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4199313521385193},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3608444333076477},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.06462568044662476},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.058051884174346924},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1375783.1375812","is_oa":true,"landing_page_url":"https://doi.org/10.1145/1375783.1375812","pdf_url":"https://dl.acm.org/action/downloadSupplement?doi=10.1145%2F1375783.1375812&file=p141-chen.pdf","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2007 Asian technology information program's (ATIP's) 3rd workshop on High performance computing in China: solution approaches to impediments for high performance computing","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/1375783.1375812","is_oa":true,"landing_page_url":"https://doi.org/10.1145/1375783.1375812","pdf_url":"https://dl.acm.org/action/downloadSupplement?doi=10.1145%2F1375783.1375812&file=p141-chen.pdf","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2007 Asian technology information program's (ATIP's) 3rd workshop on High performance computing in China: solution approaches to impediments for high performance computing","raw_type":"proceedings-article"},"sustainable_development_goals":[{"score":0.550000011920929,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2004283554.pdf","grobid_xml":"https://content.openalex.org/works/W2004283554.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W81234760","https://openalex.org/W1523680690","https://openalex.org/W1601182909","https://openalex.org/W1952243237","https://openalex.org/W1974513345","https://openalex.org/W2003603552","https://openalex.org/W2063479108","https://openalex.org/W2065087403","https://openalex.org/W2104877015","https://openalex.org/W2107538253","https://openalex.org/W2117154099","https://openalex.org/W2121781315","https://openalex.org/W2126716774","https://openalex.org/W2131197564","https://openalex.org/W2132926880","https://openalex.org/W2141216359","https://openalex.org/W2141885858","https://openalex.org/W2146542760","https://openalex.org/W2147411008","https://openalex.org/W2152331922","https://openalex.org/W2157909358","https://openalex.org/W2161732286","https://openalex.org/W2170148465","https://openalex.org/W4233815609","https://openalex.org/W4235272722","https://openalex.org/W4243691575","https://openalex.org/W4246589187","https://openalex.org/W4247871262","https://openalex.org/W4249280819","https://openalex.org/W4252166161","https://openalex.org/W6676167818","https://openalex.org/W6680848828","https://openalex.org/W6682768705"],"related_works":["https://openalex.org/W4379115841","https://openalex.org/W2083794993","https://openalex.org/W1511772879","https://openalex.org/W4394660363","https://openalex.org/W2186315912","https://openalex.org/W2248125223","https://openalex.org/W2588591308","https://openalex.org/W2127898439","https://openalex.org/W3082894236","https://openalex.org/W3195664246"],"abstract_inverted_index":{"Bioinformatics":[0,118],"applications":[1,32,96,163],"are":[2,76],"widely":[3],"used":[4],"in":[5],"life":[6],"science":[7],"and":[8,36,72,97,156],"medicine":[9],"industry":[10],"where":[11],"the":[12,28,41,82,162,170,178],"demand":[13],"on":[14,85],"high":[15],"performance":[16],"computing":[17],"system":[18,38],"is":[19,23,47,99,128],"increasing":[20],"rapidly.":[21],"It":[22],"very":[24],"important":[25,139],"to":[26,50,101],"understand":[27],"characteristics":[29],"of":[30,43,74,94,131,161],"bioinformatics":[31,58,62,95,105,133,140],"for":[33,108,121],"both":[34],"end-users":[35],"computer":[37],"designers.":[39],"With":[40],"advent":[42],"mutlticore":[44],"processors,":[45],"it":[46,98],"also":[48],"critical":[49],"know":[51],"how":[52],"well":[53],"can":[54],"multicore":[55],"processors":[56],"speedup":[57],"applications.":[59],"Although":[60],"some":[61],"benchmarks":[63,87],"have":[64,102,164],"been":[65,165],"proposed,":[66],"they":[67],"cover":[68],"limited":[69],"application":[70],"domains":[71],"most":[73,138],"them":[75],"serial":[77],"codes.":[78],"As":[79],"a":[80,103,116,129],"result,":[81],"analysis":[83],"based":[84],"these":[86],"needs":[88],"further":[89],"examination":[90],"with":[91,167,177],"broader":[92],"range":[93],"indispensable":[100],"parallel":[104],"benchmark":[106,126],"set":[107],"shared":[109,122],"memory":[110,123],"multi-processors.":[111],"This":[112],"paper":[113],"presents":[114],"PBB,":[115],"Parallel":[117],"Benchmark":[119],"suite":[120,127],"processors.":[124],"The":[125],"collection":[130],"seven":[132,137],"applications,":[134],"which":[135,174],"covers":[136],"domains,":[141],"such":[142],"as":[143],"sequence":[144],"alignment,":[145],"phylogenetic":[146],"analysis,":[147],"gene":[148],"regulatory":[149],"network":[150],"learning,":[151],"single":[152],"nucleotide":[153],"polymorphisms":[154],"study":[155],"protein":[157],"structure":[158],"prediction.":[159],"All":[160],"parallelized":[166,176],"OpenMP":[168],"except":[169],"NCBI":[171],"BLAST":[172],",":[173],"was":[175],"Pthread":[179],"library.":[180]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2016-06-24T00:00:00"}
