{"id":"https://openalex.org/W2035343756","doi":"https://doi.org/10.1145/1363686.1363987","title":"Computational approach to biological validation of protein-protein interactions discovered using literature mining","display_name":"Computational approach to biological validation of protein-protein interactions discovered using literature mining","publication_year":2008,"publication_date":"2008-03-16","ids":{"openalex":"https://openalex.org/W2035343756","doi":"https://doi.org/10.1145/1363686.1363987","mag":"2035343756"},"language":"en","primary_location":{"id":"doi:10.1145/1363686.1363987","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1363686.1363987","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2008 ACM symposium on Applied computing","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111712761","display_name":"Anna Antony","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anna Antony","raw_affiliation_strings":["Indiana University Purdue University, Indianapolis, Indiana","Indiana University-Purdue University, Indianapolis, Indiana#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University Purdue University, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University-Purdue University, Indianapolis, Indiana#TAB#","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012539575","display_name":"Srilaxmi Basetty","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Srilaxmi Basetty","raw_affiliation_strings":["Indiana University Purdue University, Indianapolis, Indiana","Indiana University-Purdue University, Indianapolis, Indiana#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University Purdue University, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University-Purdue University, Indianapolis, Indiana#TAB#","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067025338","display_name":"Shielly Hartanto","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shielly Hartanto","raw_affiliation_strings":["Indiana University Purdue University, Indianapolis, Indiana","Indiana University-Purdue University, Indianapolis, Indiana#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University Purdue University, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University-Purdue University, Indianapolis, Indiana#TAB#","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044460012","display_name":"Mathew Palakal","orcid":"https://orcid.org/0000-0002-2990-0999"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mathew Palakal","raw_affiliation_strings":["Indiana University Purdue University, Indianapolis, Indiana","Indiana University-Purdue University, Indianapolis, Indiana#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University Purdue University, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University-Purdue University, Indianapolis, Indiana#TAB#","institution_ids":["https://openalex.org/I55769427"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I55769427"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1302","last_page":"1306"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9704999923706055,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7270520925521851},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.6211435198783875},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45979875326156616},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.16487911343574524}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7270520925521851},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.6211435198783875},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45979875326156616},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.16487911343574524},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1363686.1363987","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1363686.1363987","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2008 ACM symposium on Applied computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7099999785423279,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309036","display_name":"Purdue University","ror":"https://ror.org/02dqehb95"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1969573317","https://openalex.org/W1972618381","https://openalex.org/W1984765576","https://openalex.org/W2000093524","https://openalex.org/W2011726136","https://openalex.org/W2014918755","https://openalex.org/W2020492692","https://openalex.org/W2029158589","https://openalex.org/W2055043387","https://openalex.org/W2065933707","https://openalex.org/W2076620247","https://openalex.org/W2106882534","https://openalex.org/W2143219956","https://openalex.org/W2148853951","https://openalex.org/W2172049947","https://openalex.org/W6664387049","https://openalex.org/W6681316560"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"In":[0,29],"this":[1,30],"paper":[2],"we":[3,32],"describe":[4],"a":[5,15,34],"computational":[6],"technique":[7],"to":[8,24,43],"validate":[9,25],"protein-protein":[10,93],"interactions":[11,27,71,94],"discovered":[12],"using":[13,74],"BioMap,":[14],"literature":[16,49,99],"mining":[17],"system.":[18],"Two":[19],"experiments":[20],"were":[21,72],"carried":[22],"out":[23],"the":[26,47,75,82],"pairs.":[28],"study,":[31],"used":[33,88],"total":[35],"of":[36,64,92],"32,693":[37],"documents":[38],"with":[39],"193,738":[40],"sentences":[41],"related":[42],"multiple":[44],"sclerosis":[45],"from":[46],"Medline":[48],"database.":[50],"From":[51],"these":[52],"sentences,":[53],"BioMap":[54],"found":[55],"1004":[56],"explicit":[57,67],"and":[58,68],"15,000":[59],"implicit":[60,70],"protein":[61],"interaction":[62],"pairs":[63],"which":[65],"271":[66],"16":[69],"validated":[73],"proposed":[76,83],"techniques.":[77],"These":[78],"results":[79],"indicate":[80],"that":[81,95],"methods":[84],"can":[85],"be":[86],"effectively":[87],"for":[89],"biological":[90],"verification":[91],"are":[96],"obtained":[97],"through":[98],"mining.":[100]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
