{"id":"https://openalex.org/W1983616285","doi":"https://doi.org/10.1145/1363686.1363984","title":"Mining disease-specific molecular association profiles from biomedical literature","display_name":"Mining disease-specific molecular association profiles from biomedical literature","publication_year":2008,"publication_date":"2008-03-16","ids":{"openalex":"https://openalex.org/W1983616285","doi":"https://doi.org/10.1145/1363686.1363984","mag":"1983616285"},"language":"en","primary_location":{"id":"doi:10.1145/1363686.1363984","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1363686.1363984","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2008 ACM symposium on Applied computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100419499","display_name":"Jiao Li","orcid":"https://orcid.org/0000-0002-8027-5877"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jiao Li","raw_affiliation_strings":["Tsinghua University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100671241","display_name":"Xiaoyan Zhu","orcid":"https://orcid.org/0000-0002-1574-8762"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyan Zhu","raw_affiliation_strings":["Tsinghua University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058469124","display_name":"Jake Y. Chen","orcid":"https://orcid.org/0000-0001-8829-7504"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]},{"id":"https://openalex.org/I135191193","display_name":"University of Indianapolis","ror":"https://ror.org/052133d12","country_code":"US","type":"education","lineage":["https://openalex.org/I135191193"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jake Yue Chen","raw_affiliation_strings":["Purdue University School of Science, Indianapolis, IN","Purdue University School of Science, Indianapolis, IN#TAB#"],"affiliations":[{"raw_affiliation_string":"Purdue University School of Science, Indianapolis, IN","institution_ids":["https://openalex.org/I135191193","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Purdue University School of Science, Indianapolis, IN#TAB#","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I219193219"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100419499"],"corresponding_institution_ids":["https://openalex.org/I99065089"],"apc_list":null,"apc_paid":null,"fwci":0.2693,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.5790149,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1287","last_page":"1291"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9769999980926514,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/association-rule-learning","display_name":"Association rule learning","score":0.6831641793251038},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6245994567871094},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.5749709606170654},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4937375485897064},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.4697326123714447},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45939040184020996},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34828054904937744},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3391076326370239},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.19958025217056274},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10468611121177673},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.10291704535484314},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.07904449105262756}],"concepts":[{"id":"https://openalex.org/C193524817","wikidata":"https://www.wikidata.org/wiki/Q386780","display_name":"Association rule learning","level":2,"score":0.6831641793251038},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6245994567871094},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.5749709606170654},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4937375485897064},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.4697326123714447},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45939040184020996},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34828054904937744},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3391076326370239},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.19958025217056274},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10468611121177673},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.10291704535484314},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.07904449105262756},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1363686.1363984","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1363686.1363984","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2008 ACM symposium on Applied computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5177318564","display_name":null,"funder_award_id":"2007CB311003","funder_id":"https://openalex.org/F4320321540","funder_display_name":"Ministry of Science and Technology of the People's Republic of China"},{"id":"https://openalex.org/G6349833400","display_name":null,"funder_award_id":"2006AA02Z321","funder_id":"https://openalex.org/F4320321540","funder_display_name":"Ministry of Science and Technology of the People's Republic of China"},{"id":"https://openalex.org/G666262031","display_name":null,"funder_award_id":"6.06E+15","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321540","display_name":"Ministry of Science and Technology of the People's Republic of China","ror":"https://ror.org/027s68j25"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W139688377","https://openalex.org/W1990347601","https://openalex.org/W1994306321","https://openalex.org/W2014907590","https://openalex.org/W2015954361","https://openalex.org/W2019114389","https://openalex.org/W2053673723","https://openalex.org/W2058681427","https://openalex.org/W2070448217","https://openalex.org/W2080866509","https://openalex.org/W2094591616","https://openalex.org/W2110065044","https://openalex.org/W2118002992","https://openalex.org/W2119412782","https://openalex.org/W2123254782","https://openalex.org/W2124809457","https://openalex.org/W2156750171","https://openalex.org/W2168905447","https://openalex.org/W4240861547","https://openalex.org/W4242834361","https://openalex.org/W4248144637","https://openalex.org/W4250281364"],"related_works":["https://openalex.org/W2392697706","https://openalex.org/W366033468","https://openalex.org/W128746893","https://openalex.org/W2367573304","https://openalex.org/W2537030075","https://openalex.org/W2006971496","https://openalex.org/W2065998343","https://openalex.org/W2369717039","https://openalex.org/W2384676159","https://openalex.org/W2982449560"],"abstract_inverted_index":{"We":[0,25,124,155],"developed":[1],"a":[2,34,64,93,118,129],"new":[3],"literature":[4,21,36,103],"mining":[5,37,104],"paradigm":[6,31],"with":[7],"the":[8,30,57,88,126,160],"ultimate":[9],"goal":[10],"of":[11,47,66,133],"enabling":[12],"knowledge":[13],"discovery":[14],"in":[15,159,188],"molecular":[16,80,130],"association":[17,42,95],"profiles":[18,187,203],"generated":[19],"from":[20,87],"and":[22,39,62,83,91,121,147,164,180,195],"prior":[23],"knowledge.":[24],"show":[26],"how":[27],"to":[28,128,173,176,184,199,204],"implement":[29],"by":[32],"building":[33],"prototype":[35],"framework":[38,45,127],"performing":[40],"molecule-bioGist":[41,94],"mining.":[43],"The":[44,50,69],"consists":[46],"two":[48,76],"modules.":[49],"first":[51,89],"module,":[52,71,90],"Textual":[53],"Data":[54,73],"Mining,":[55,74],"takes":[56,75],"synonym-expanded":[58],"disease-related":[59,79],"molecule":[60],"names":[61],"outputs":[63,92],"list":[65,86],"bioGist":[67,85,162],"list.":[68],"second":[70],"Structured":[72],"inputs,":[77],"initial":[78],"query":[81],"terms":[82],"extracted":[84],"matrix.":[96],"Our":[97],"approach":[98],"is":[99,105],"novel":[100],"because":[101],"biomedical":[102],"used":[106],"here":[107],"not":[108],"only":[109],"as":[110,117,153],"an":[111],"\"information":[112],"retrieval\"":[113],"tool,":[114],"but":[115],"also":[116],"\"hypothesis":[119],"generation":[120],"validation\"":[122],"platform.":[123],"applied":[125],"pharmacology":[131],"study":[132],"breast":[134,139,177,206],"cancer.":[135,178,207],"Based":[136],"on":[137],"214":[138],"cancer-related":[140],"proteins,":[141],"429,067":[142],"MEDLINE":[143],"abstracts":[144],"were":[145,151,171,182,197],"retrieved,":[146],"4,491":[148],"drug":[149,189],"compounds":[150],"identified":[152,198],"bioGists.":[154],"evaluated":[156],"172":[157],"hydrocarbons":[158,170],"above":[161],"list,":[163],"found":[165,183],"that":[166],"more":[167],"than":[168],"82.5%":[169],"verified":[172],"be":[174],"related":[175],"BRCA1":[179],"BRCA2":[181],"have":[185,200],"similar":[186,201],"compound":[190],"studies,":[191],"whereas":[192],"\"doxorubicin\",":[193],"\"etoposide\",":[194],"\"paclitaxel\"":[196],"pharmacological":[202],"treat":[205]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
