{"id":"https://openalex.org/W2074329842","doi":"https://doi.org/10.1145/1342320.1342322","title":"Compositional mining of multirelational biological datasets","display_name":"Compositional mining of multirelational biological datasets","publication_year":2008,"publication_date":"2008-03-01","ids":{"openalex":"https://openalex.org/W2074329842","doi":"https://doi.org/10.1145/1342320.1342322","mag":"2074329842"},"language":"en","primary_location":{"id":"doi:10.1145/1342320.1342322","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1342320.1342322","pdf_url":null,"source":{"id":"https://openalex.org/S41523882","display_name":"ACM Transactions on Knowledge Discovery from Data","issn_l":"1556-4681","issn":["1556-4681","1556-472X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Transactions on Knowledge Discovery from Data","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108578677","display_name":"Ying Jin","orcid":"https://orcid.org/0000-0003-0070-2048"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ying Jin","raw_affiliation_strings":["Virginia Tech"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Tech","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073142937","display_name":"T. M. Murali","orcid":"https://orcid.org/0000-0003-3688-4672"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. M. Murali","raw_affiliation_strings":["Virginia Tech"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Tech","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035052603","display_name":"Naren Ramakrishnan","orcid":"https://orcid.org/0000-0002-1821-9743"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Naren Ramakrishnan","raw_affiliation_strings":["Virginia Tech"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Tech","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":null,"apc_paid":null,"fwci":0.5557,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.67323605,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2","issue":"1","first_page":"1","last_page":"35"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.801132082939148},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.6135961413383484},{"id":"https://openalex.org/keywords/biclustering","display_name":"Biclustering","score":0.5266081094741821},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5192625522613525},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.49393826723098755},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4645160734653473},{"id":"https://openalex.org/keywords/schema-matching","display_name":"Schema matching","score":0.44920480251312256},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.31952643394470215},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2804725766181946},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.21916428208351135},{"id":"https://openalex.org/keywords/fuzzy-clustering","display_name":"Fuzzy clustering","score":0.1350218653678894},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.09915125370025635}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.801132082939148},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.6135961413383484},{"id":"https://openalex.org/C144817290","wikidata":"https://www.wikidata.org/wiki/Q2976575","display_name":"Biclustering","level":5,"score":0.5266081094741821},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5192625522613525},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.49393826723098755},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4645160734653473},{"id":"https://openalex.org/C2777327318","wikidata":"https://www.wikidata.org/wiki/Q1408390","display_name":"Schema matching","level":3,"score":0.44920480251312256},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.31952643394470215},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2804725766181946},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.21916428208351135},{"id":"https://openalex.org/C17212007","wikidata":"https://www.wikidata.org/wiki/Q5511111","display_name":"Fuzzy clustering","level":3,"score":0.1350218653678894},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.09915125370025635},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C33704608","wikidata":"https://www.wikidata.org/wiki/Q5014717","display_name":"CURE data clustering algorithm","level":4,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1145/1342320.1342322","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1342320.1342322","pdf_url":null,"source":{"id":"https://openalex.org/S41523882","display_name":"ACM Transactions on Knowledge Discovery from Data","issn_l":"1556-4681","issn":["1556-4681","1556-472X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Transactions on Knowledge Discovery from Data","raw_type":"journal-article"},{"id":"pmh:oai:vtechworks.lib.vt.edu:10919/19820","is_oa":false,"landing_page_url":"http://eprints.cs.vt.edu/archive/00000988/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400248","display_name":"VTechWorks (Virginia Tech)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I859038795","host_organization_name":"Virginia Tech","host_organization_lineage":["https://openalex.org/I859038795"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Technical report"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.596.7330","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.596.7330","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://eprints.cs.vt.edu/archive/00000988/01/CDM.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.616.3223","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.616.3223","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://bioinformatics.cs.vt.edu/~murali/papers/final_cdm.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.66.7238","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.66.7238","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://people.cs.vt.edu/~ramakris/papers/tkdd-cdm.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":60,"referenced_works":["https://openalex.org/W72943092","https://openalex.org/W128790735","https://openalex.org/W1493403933","https://openalex.org/W1506285740","https://openalex.org/W1510033442","https://openalex.org/W1537336823","https://openalex.org/W1560366047","https://openalex.org/W1971604907","https://openalex.org/W1994803330","https://openalex.org/W2008896880","https://openalex.org/W2031987542","https://openalex.org/W2032244673","https://openalex.org/W2034065427","https://openalex.org/W2039314072","https://openalex.org/W2047866469","https://openalex.org/W2064787891","https://openalex.org/W2066511342","https://openalex.org/W2066931259","https://openalex.org/W2073308541","https://openalex.org/W2079377885","https://openalex.org/W2086579410","https://openalex.org/W2086614331","https://openalex.org/W2101181377","https://openalex.org/W2102281458","https://openalex.org/W2103017472","https://openalex.org/W2105685244","https://openalex.org/W2105712639","https://openalex.org/W2108238425","https://openalex.org/W2109100546","https://openalex.org/W2109603199","https://openalex.org/W2110065044","https://openalex.org/W2110686900","https://openalex.org/W2112816530","https://openalex.org/W2113243831","https://openalex.org/W2114729479","https://openalex.org/W2121906195","https://openalex.org/W2123280311","https://openalex.org/W2123575406","https://openalex.org/W2126256482","https://openalex.org/W2127675794","https://openalex.org/W2130410032","https://openalex.org/W2131440147","https://openalex.org/W2134155244","https://openalex.org/W2134672568","https://openalex.org/W2136107412","https://openalex.org/W2137970956","https://openalex.org/W2139802966","https://openalex.org/W2141144953","https://openalex.org/W2141244067","https://openalex.org/W2141729174","https://openalex.org/W2144544802","https://openalex.org/W2147714160","https://openalex.org/W2154946202","https://openalex.org/W2155225302","https://openalex.org/W2155471967","https://openalex.org/W2163491148","https://openalex.org/W2504829889","https://openalex.org/W3149838063","https://openalex.org/W4210297234","https://openalex.org/W4255855797"],"related_works":["https://openalex.org/W2611629964","https://openalex.org/W3208717180","https://openalex.org/W2406112091","https://openalex.org/W2125859764","https://openalex.org/W2113284213","https://openalex.org/W2422558391","https://openalex.org/W2014400548","https://openalex.org/W4301779090","https://openalex.org/W3131242005","https://openalex.org/W2029826694"],"abstract_inverted_index":{"High-throughput":[0],"biological":[1],"screens":[2],"are":[3],"yielding":[4,142],"ever-growing":[5],"streams":[6],"of":[7,12,20,29,76,89,126,145,152,161],"information":[8],"about":[9],"multiple":[10],"aspects":[11],"cellular":[13],"activity.":[14],"As":[15],"more":[16,18],"and":[17,66,95,113,128,165],"categories":[19,160],"datasets":[21],"come":[22],"online,":[23],"there":[24],"is":[25],"a":[26,92,108],"corresponding":[27],"multitude":[28],"ways":[30,84],"in":[31,82,117,174],"which":[32],"inferences":[33],"can":[34,57,79,103,120],"be":[35,58,80,104,121],"chained":[36],"across":[37,159],"them,":[38],"motivating":[39],"the":[40,101,118,162,168],"need":[41],"for":[42],"compositional":[43,54,109,153],"data":[44,55,110,139,154],"mining":[45,56,65,111,140],"algorithms.":[46],"In":[47],"this":[48],"article,":[49],"we":[50,98],"argue":[51],"that":[52,78],"such":[53],"effectively":[59],"realized":[60],"by":[61],"functionally":[62],"cascading":[63],"redescription":[64,129],"biclustering":[67,127],"algorithms":[68],"as":[69],"primitives.":[70],"Both":[71],"these":[72],"primitives":[73],"mirror":[74],"shifts":[75],"vocabulary":[77],"composed":[81],"arbitrary":[83],"to":[85,135],"create":[86],"rich":[87],"chains":[88],"inferences.":[90],"Given":[91],"relational":[93],"database":[94],"its":[96],"schema,":[97],"show":[99],"how":[100,114],"schema":[102,119],"automatically":[105],"compiled":[106],"into":[107],"program,":[112],"different":[115],"domains":[116],"related":[122],"through":[123],"logical":[124],"sequences":[125],"invocations.":[130],"This":[131],"feature":[132],"allows":[133],"us":[134],"rapidly":[136],"prototype":[137],"new":[138],"applications,":[141],"greater":[143],"understanding":[144,167],"scientific":[146],"datasets.":[147],"We":[148],"describe":[149],"two":[150],"applications":[151],"mining:":[155],"(i)":[156],"matching":[157],"terms":[158],"Gene":[163],"Ontology":[164],"(ii)":[166],"molecular":[169],"mechanisms":[170],"underlying":[171],"stress":[172],"response":[173],"human":[175],"cells.":[176]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
