{"id":"https://openalex.org/W2016828385","doi":"https://doi.org/10.1145/1330598.1330712","title":"Protein structure similarity detection using alignment of secondary structure elements and their geometric properties","display_name":"Protein structure similarity detection using alignment of secondary structure elements and their geometric properties","publication_year":2007,"publication_date":"2007-01-01","ids":{"openalex":"https://openalex.org/W2016828385","doi":"https://doi.org/10.1145/1330598.1330712","mag":"2016828385"},"language":"en","primary_location":{"id":"doi:10.1145/1330598.1330712","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1330598.1330712","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2007 international conference on Computer systems and technologies  - CompSysTech '07","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030147794","display_name":"Dobrinka Petrova","orcid":"https://orcid.org/0000-0003-3104-3022"},"institutions":[{"id":"https://openalex.org/I31151848","display_name":"Technical University of Sofia","ror":"https://ror.org/052prhs50","country_code":"BG","type":"education","lineage":["https://openalex.org/I31151848"]}],"countries":["BG"],"is_corresponding":true,"raw_author_name":"Dobrinka Petrova","raw_affiliation_strings":["Technical University at Sofia"],"affiliations":[{"raw_affiliation_string":"Technical University at Sofia","institution_ids":["https://openalex.org/I31151848"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008109559","display_name":"Stoicho D. Stoichev","orcid":"https://orcid.org/0000-0002-6217-460X"},"institutions":[{"id":"https://openalex.org/I31151848","display_name":"Technical University of Sofia","ror":"https://ror.org/052prhs50","country_code":"BG","type":"education","lineage":["https://openalex.org/I31151848"]}],"countries":["BG"],"is_corresponding":false,"raw_author_name":"Stoicho Stoichev","raw_affiliation_strings":["Technical University at Sofia"],"affiliations":[{"raw_affiliation_string":"Technical University at Sofia","institution_ids":["https://openalex.org/I31151848"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5030147794"],"corresponding_institution_ids":["https://openalex.org/I31151848"],"apc_list":null,"apc_paid":null,"fwci":0.1309,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.51349345,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.6899726986885071},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6669331192970276},{"id":"https://openalex.org/keywords/position","display_name":"Position (finance)","score":0.6192653179168701},{"id":"https://openalex.org/keywords/structural-alignment","display_name":"Structural alignment","score":0.5394678115844727},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.5155375003814697},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.4450906813144684},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.43072882294654846},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36540162563323975},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3570331633090973},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.351563036441803},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24715358018875122},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.192836195230484},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.16397684812545776},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1547071933746338},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.09668934345245361},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09190371632575989},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.08201491832733154}],"concepts":[{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.6899726986885071},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6669331192970276},{"id":"https://openalex.org/C198082294","wikidata":"https://www.wikidata.org/wiki/Q3399648","display_name":"Position (finance)","level":2,"score":0.6192653179168701},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.5394678115844727},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.5155375003814697},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.4450906813144684},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.43072882294654846},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36540162563323975},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3570331633090973},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.351563036441803},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24715358018875122},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.192836195230484},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.16397684812545776},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1547071933746338},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.09668934345245361},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09190371632575989},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.08201491832733154},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1330598.1330712","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1330598.1330712","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2007 international conference on Computer systems and technologies  - CompSysTech '07","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W1965910641","https://openalex.org/W2022058405","https://openalex.org/W2140967213","https://openalex.org/W2141444753","https://openalex.org/W2537808600"],"related_works":["https://openalex.org/W2187357871","https://openalex.org/W2036578954","https://openalex.org/W1493920382","https://openalex.org/W2113442821","https://openalex.org/W4206825711","https://openalex.org/W2400206922","https://openalex.org/W2036623301","https://openalex.org/W2157750263","https://openalex.org/W2728406523","https://openalex.org/W1993244577"],"abstract_inverted_index":{"Proteins":[0],"are":[1,21,26,40],"presented":[2],"with":[3,72],"sequences":[4,48],"of":[5,18,34,49,55,68,76],"secondary":[6,50],"structure":[7,51],"elements":[8],"-":[9],"helices":[10],"and":[11],"sheets,":[12],"which":[13],"compose":[14],"them.":[15],"Geometric":[16],"properties":[17],"protein":[19],"chains":[20],"considered,":[22],"when":[23],"distance":[24,29,78],"factors":[25],"computed.":[27],"Each":[28],"factor":[30],"shows":[31],"relative":[32],"position":[33],"two":[35,69],"compared":[36,41],"elements.":[37,52],"Protein":[38],"structures":[39],"by":[42,64],"an":[43],"alignment":[44],"algorithm,":[45],"applied":[46],"to":[47],"A":[53],"measure":[54],"similarity":[56],"at":[57],"each":[58],"step":[59],"is":[60],"not":[61],"only":[62],"calculated":[63],"a":[65],"simple":[66],"comparison":[67],"elements,":[70],"but":[71],"the":[73],"active":[74],"use":[75],"corresponding":[77],"factors.":[79]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}