{"id":"https://openalex.org/W2119788152","doi":"https://doi.org/10.1145/1298406.1298418","title":"Searching ontologies based on content","display_name":"Searching ontologies based on content","publication_year":2007,"publication_date":"2007-10-28","ids":{"openalex":"https://openalex.org/W2119788152","doi":"https://doi.org/10.1145/1298406.1298418","mag":"2119788152"},"language":"en","primary_location":{"id":"doi:10.1145/1298406.1298418","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1298406.1298418","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 4th international conference on Knowledge capture","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074716096","display_name":"Harith Alani","orcid":"https://orcid.org/0000-0003-2784-349X"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Harith Alani","raw_affiliation_strings":["University of Southampton, Southampton, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Southampton, Southampton, United Kingdom","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041421536","display_name":"Natasha Noy","orcid":"https://orcid.org/0000-0002-7437-0624"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natasha F. Noy","raw_affiliation_strings":["Stanford University, Stanford, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041175834","display_name":"Nigam H. Shah","orcid":"https://orcid.org/0000-0001-9385-7158"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nigam Shah","raw_affiliation_strings":["Stanford University, Stanford, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056692594","display_name":"Nigel Shadbolt","orcid":"https://orcid.org/0000-0002-5085-9724"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nigel Shadbolt","raw_affiliation_strings":["University of Southampton, Southampton, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Southampton, Southampton, United Kingdom","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009128820","display_name":"Mark A. Musen","orcid":"https://orcid.org/0000-0003-3325-793X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark A. Musen","raw_affiliation_strings":["Stanford University, Stanford, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"55","last_page":"62"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8269156813621521},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8164106607437134},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.7629702091217041},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.6164858937263489},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.5656195282936096},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5370826125144958},{"id":"https://openalex.org/keywords/ontology-components","display_name":"Ontology components","score":0.5058526992797852},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5026915073394775},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.48898470401763916},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.47007161378860474},{"id":"https://openalex.org/keywords/query-expansion","display_name":"Query expansion","score":0.4412650167942047},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.42907658219337463},{"id":"https://openalex.org/keywords/web-search-query","display_name":"Web search query","score":0.4268224537372589},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.3183562159538269},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.30931681394577026},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.20718342065811157},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16095104813575745},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07598268985748291}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8269156813621521},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8164106607437134},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.7629702091217041},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.6164858937263489},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.5656195282936096},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5370826125144958},{"id":"https://openalex.org/C154210476","wikidata":"https://www.wikidata.org/wiki/Q7095057","display_name":"Ontology components","level":5,"score":0.5058526992797852},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5026915073394775},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.48898470401763916},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.47007161378860474},{"id":"https://openalex.org/C99016210","wikidata":"https://www.wikidata.org/wiki/Q5488129","display_name":"Query expansion","level":2,"score":0.4412650167942047},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.42907658219337463},{"id":"https://openalex.org/C164120249","wikidata":"https://www.wikidata.org/wiki/Q995982","display_name":"Web search query","level":3,"score":0.4268224537372589},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.3183562159538269},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.30931681394577026},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.20718342065811157},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16095104813575745},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07598268985748291},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1298406.1298418","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1298406.1298418","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 4th international conference on Knowledge capture","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6899999976158142,"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320319993","display_name":"Leverhulme Trust","ror":"https://ror.org/012mzw131"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1539367018","https://openalex.org/W1555643513","https://openalex.org/W1606238867","https://openalex.org/W1648056358","https://openalex.org/W1659833910","https://openalex.org/W1854214752","https://openalex.org/W1920714934","https://openalex.org/W1956559956","https://openalex.org/W1978799369","https://openalex.org/W2028709054","https://openalex.org/W2105106523","https://openalex.org/W2135272908","https://openalex.org/W2156452775","https://openalex.org/W2163670493","https://openalex.org/W2325227998","https://openalex.org/W3003709066","https://openalex.org/W4285719527","https://openalex.org/W6601733978","https://openalex.org/W6636215346","https://openalex.org/W6639055396","https://openalex.org/W6640862754"],"related_works":["https://openalex.org/W1506177826","https://openalex.org/W2726617685","https://openalex.org/W2732632690","https://openalex.org/W72173000","https://openalex.org/W2012420033","https://openalex.org/W4206428734","https://openalex.org/W1794266373","https://openalex.org/W2075856122","https://openalex.org/W2185688944","https://openalex.org/W2132754246"],"abstract_inverted_index":{"As":[0],"more":[1],"ontologies":[2,9,27,50,119],"become":[3],"publicly":[4],"available,":[5],"finding":[6,23],"the":[7,18,36,44,73,77,83,92,129,137,157,169,180,186,190,211,217,235],"\"right\"":[8],"becomes":[10],"much":[11],"harder.":[12],"In":[13,39],"this":[14],"paper,":[15],"we":[16,41,102,126],"address":[17],"problem":[19],"of":[20,26,79,86,97,114,133,175],"ontology":[21,30,58,88],"search:":[22],"a":[24,53,104,121,131,173,207],"collection":[25,132],"from":[28,128,183],"an":[29,57],"repository":[31,174],"that":[32,62,108,135,196,213],"are":[33,63,248],"relevant":[34,51,65],"to":[35,52,66,155,210],"user's":[37],"query.":[38,159],"particular,":[40],"look":[42],"at":[43],"case":[45,236],"when":[46],"users":[47,110],"search":[48,214],"for":[49,118,148,166,200,216,234],"particular":[54,122],"topic":[55,123],"(e.g.,":[56,82,124,140],"about":[59],"anatomy).":[60,149],"Ontologies":[61],"most":[64],"such":[67,142],"query":[68,74,201,219],"often":[69],"do":[70],"not":[71,90,238],"have":[72,91],"term":[75,93],"in":[76,95,111,168,185],"names":[78,227,243],"their":[80],"concepts":[81],"Foundational":[84],"Model":[85],"Anatomy":[87],"does":[89],"\"anatomy\"":[94],"any":[96],"its":[98],"concepts'":[99],"names).":[100],"Thus,":[101],"present":[103],"new":[105],"ontology-search":[106],"technique":[107],"helps":[109],"these":[112,153],"types":[113],"searches.":[115],"When":[116],"looking":[117],"on":[120,164],"anatomy),":[125],"retrieve":[127],"Web":[130],"terms":[134,141,154,220],"represent":[136],"given":[138],"domain":[139,171,188],"as":[143,189],"body,":[144],"brain,":[145],"skin,":[146],"etc.":[147],"We":[150,160,178,230],"then":[151],"use":[152,179],"expand":[156],"user":[158,218],"evaluate":[161],"our":[162,198],"algorithm":[163],"queries":[165],"topics":[167],"biomedical":[170,176],"against":[172],"ontologies.":[177],"results":[181,205],"obtained":[182],"experts":[184],"biomedical-ontology":[187],"gold":[191],"standard.":[192],"Our":[193],"experiments":[194],"demonstrate":[195],"using":[197],"method":[199],"expansion":[202],"improves":[203],"retrieval":[204],"by":[206],"113%,":[208],"compared":[209],"tools":[212],"only":[215,223,239],"and":[221,225,241],"consider":[222],"class":[224,240],"property":[226,242,246],"(like":[228],"Swoogle).":[229],"show":[231],"43%":[232],"improvement":[233],"where":[237],"but":[244],"also":[245],"values":[247],"taken":[249],"into":[250],"account.":[251]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
