{"id":"https://openalex.org/W2143075476","doi":"https://doi.org/10.1145/1278480.1278643","title":"Synthesizing stochasticity in biochemical systems","display_name":"Synthesizing stochasticity in biochemical systems","publication_year":2007,"publication_date":"2007-01-01","ids":{"openalex":"https://openalex.org/W2143075476","doi":"https://doi.org/10.1145/1278480.1278643","mag":"2143075476"},"language":"en","primary_location":{"id":"doi:10.1145/1278480.1278643","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1278480.1278643","pdf_url":null,"source":{"id":"https://openalex.org/S4210231368","display_name":"Proceedings - ACM IEEE Design Automation Conference","issn_l":"0738-100X","issn":["0738-100X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 44th annual conference on Design automation - DAC '07","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://conservancy.umn.edu/bitstreams/958086b3-f78a-45a4-8e1d-f251c311eb9e/download","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033585680","display_name":"Brian Fett","orcid":null},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Brian Fett","raw_affiliation_strings":["University of Minnesota, Minneapolis, MN","University of Minnesota , Minneapolis, Mn"],"affiliations":[{"raw_affiliation_string":"University of Minnesota, Minneapolis, MN","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"University of Minnesota , Minneapolis, Mn","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043861677","display_name":"Jehoshua Bruck","orcid":"https://orcid.org/0000-0001-8474-0812"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jehoshua Bruck","raw_affiliation_strings":["California Institute of Technology, Pasadena, CA","[California Institute of Technology, Pasadena, CA]"],"affiliations":[{"raw_affiliation_string":"California Institute of Technology, Pasadena, CA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"[California Institute of Technology, Pasadena, CA]","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080355470","display_name":"Marc Riedel","orcid":"https://orcid.org/0000-0001-6408-6067"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marc D. Riedel","raw_affiliation_strings":["University of Minnesota, Minneapolis, MN","University of Minnesota , Minneapolis, Mn"],"affiliations":[{"raw_affiliation_string":"University of Minnesota, Minneapolis, MN","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"University of Minnesota , Minneapolis, Mn","institution_ids":["https://openalex.org/I130238516"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5033585680"],"corresponding_institution_ids":["https://openalex.org/I130238516"],"apc_list":null,"apc_paid":null,"fwci":1.2101,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.78260927,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"640","last_page":"640"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5775337219238281}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5775337219238281}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1145/1278480.1278643","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1278480.1278643","pdf_url":null,"source":{"id":"https://openalex.org/S4210231368","display_name":"Proceedings - ACM IEEE Design Automation Conference","issn_l":"0738-100X","issn":["0738-100X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 44th annual conference on Design automation - DAC '07","raw_type":"proceedings-article"},{"id":"pmh:oai:conservancy.umn.edu:11299/93098","is_oa":true,"landing_page_url":"http://purl.umn.edu/93098","pdf_url":"https://conservancy.umn.edu/bitstreams/958086b3-f78a-45a4-8e1d-f251c311eb9e/download","source":{"id":"https://openalex.org/S4306402521","display_name":"University of Minnesota Digital Conservancy (University of Minnesota)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I130238516","host_organization_name":"University of Minnesota","host_organization_lineage":["https://openalex.org/I130238516"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis or Dissertation"},{"id":"pmh:oai:authors.library.caltech.edu:26117","is_oa":false,"landing_page_url":"https://resolver.caltech.edu/CaltechPARADISE:2007.ETR081","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Report or Paper"},{"id":"pmh:oai:authors.library.caltech.edu:71301","is_oa":false,"landing_page_url":"https://authors.library.caltech.edu/71301/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Book Section"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.556.7348","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.556.7348","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://videos.dac.com/44th/papers/36_4.pdf","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:conservancy.umn.edu:11299/93098","is_oa":true,"landing_page_url":"http://purl.umn.edu/93098","pdf_url":"https://conservancy.umn.edu/bitstreams/958086b3-f78a-45a4-8e1d-f251c311eb9e/download","source":{"id":"https://openalex.org/S4306402521","display_name":"University of Minnesota Digital Conservancy (University of Minnesota)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I130238516","host_organization_name":"University of Minnesota","host_organization_lineage":["https://openalex.org/I130238516"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis or Dissertation"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2143075476.pdf"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W82969997","https://openalex.org/W1660272337","https://openalex.org/W1917144541","https://openalex.org/W1946177469","https://openalex.org/W1982531184","https://openalex.org/W2037298848","https://openalex.org/W2041797933","https://openalex.org/W2047882868","https://openalex.org/W2078734278","https://openalex.org/W2092003547","https://openalex.org/W2102869475","https://openalex.org/W2136289400","https://openalex.org/W2149202606","https://openalex.org/W2155418451","https://openalex.org/W2171228793","https://openalex.org/W2172162088"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"Randomness":[0],"is":[1,14,87,95,100,111],"inherent":[2],"to":[3,80,91],"biochemistry:":[4],"at":[5],"each":[6],"instant,":[7],"the":[8,97,104,152,161,165],"sequence":[9],"of":[10,17,39,69,76,103,106,164],"reactions":[11,71],"that":[12,72],"fires":[13],"a":[15,37,62,67,81,101,146],"matter":[16],"chance.":[18],"Some":[19],"biological":[20],"systems":[21,158],"exploit":[22],"such":[23,53,134,159],"randomness,":[24],"choosing":[25],"between":[26],"different":[27,42,74],"outcomes":[28],"stochastically":[29],"-":[30],"in":[31,56,132,155],"effect,":[32],"hedging":[33],"their":[34],"bets":[35],"with":[36],"portfolio":[38],"responses":[40],"for":[41,51,65,118,148],"environmental":[43],"conditions.":[44],"In":[45],"this":[46],"paper,":[47],"we":[48],"discuss":[49,116],"techniques":[50],"synthesizing":[52],"stochastic":[54,153],"behavior":[55],"engineered":[57],"biochemical":[58,70,136,157],"systems.":[59],"We":[60,115],"propose":[61],"general":[63],"method":[64,110],"designing":[66],"set":[68],"produces":[73],"combinations":[75],"molecular":[77],"types":[78],"according":[79],"specified":[82],"probability":[83,98],"distribution.":[84],"The":[85,109],"response":[86],"precise":[88],"and":[89,113,140,150],"robust":[90],"perturbations.":[92],"Furthermore,":[93],"it":[94,144],"programmable:":[96],"distribution":[99],"function":[102],"quantities":[105],"input":[107],"types.":[108],"modular":[112],"extensible.":[114],"strategies":[117],"implementing":[119],"various":[120],"functional":[121],"dependencies:":[122],"linear,":[123],"logarithmic,":[124],"exponential,":[125],"etc.":[126],"This":[127],"work":[128],"has":[129],"potential":[130],"applications":[131],"domains":[133],"as":[135,160],"sensing,":[137],"drug":[138],"production,":[139],"disease":[141],"treatment.":[142],"Moreover,":[143],"provides":[145],"framework":[147],"analyzing":[149],"characterizing":[151],"dynamics":[154],"natural":[156],"lysis/lysogeny":[162],"switch":[163],"lambda":[166],"bacteriophage.":[167]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
