{"id":"https://openalex.org/W2115679291","doi":"https://doi.org/10.1145/1276958.1277033","title":"Automated alphabet reduction method with evolutionary algorithms for protein structure prediction","display_name":"Automated alphabet reduction method with evolutionary algorithms for protein structure prediction","publication_year":2007,"publication_date":"2007-07-07","ids":{"openalex":"https://openalex.org/W2115679291","doi":"https://doi.org/10.1145/1276958.1277033","mag":"2115679291"},"language":"en","primary_location":{"id":"doi:10.1145/1276958.1277033","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1276958.1277033","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th annual conference on Genetic and evolutionary computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012372361","display_name":"Jaume Bacardit","orcid":"https://orcid.org/0000-0002-2692-7205"},"institutions":[{"id":"https://openalex.org/I142263535","display_name":"University of Nottingham","ror":"https://ror.org/01ee9ar58","country_code":"GB","type":"education","lineage":["https://openalex.org/I142263535"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jaume Bacardit","raw_affiliation_strings":["University of Nottingham, Nottingham, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Nottingham, Nottingham, United Kingdom","institution_ids":["https://openalex.org/I142263535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008269407","display_name":"Michael B. Stout","orcid":"https://orcid.org/0000-0002-9996-9123"},"institutions":[{"id":"https://openalex.org/I142263535","display_name":"University of Nottingham","ror":"https://ror.org/01ee9ar58","country_code":"GB","type":"education","lineage":["https://openalex.org/I142263535"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Michael Stout","raw_affiliation_strings":["University of Nottingham, Nottingham, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Nottingham, Nottingham, United Kingdom","institution_ids":["https://openalex.org/I142263535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051687648","display_name":"Jonathan D. Hirst","orcid":"https://orcid.org/0000-0002-2726-0983"},"institutions":[{"id":"https://openalex.org/I142263535","display_name":"University of Nottingham","ror":"https://ror.org/01ee9ar58","country_code":"GB","type":"education","lineage":["https://openalex.org/I142263535"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jonathan D. Hirst","raw_affiliation_strings":["University of Nottingham, Nottingham, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Nottingham, Nottingham, United Kingdom","institution_ids":["https://openalex.org/I142263535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109916092","display_name":"Kumara Sastry","orcid":null},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kumara Sastry","raw_affiliation_strings":["University of Illinois at Urbana-Champaign, Urbana, IL","[University of Illinois at Urbana-Champaign,Urbana,IL]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Illinois at Urbana-Champaign, Urbana, IL","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"[University of Illinois at Urbana-Champaign,Urbana,IL]","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036640710","display_name":"Xavier Llor\u00e0","orcid":null},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xavier Llor\u00e0","raw_affiliation_strings":["University of Illinois at Urbana-Champaign, Urbana, IL","[University of Illinois at Urbana-Champaign,Urbana,IL]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Illinois at Urbana-Champaign, Urbana, IL","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"[University of Illinois at Urbana-Champaign,Urbana,IL]","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043620976","display_name":"Natalio Krasnogor","orcid":"https://orcid.org/0000-0002-2651-4320"},"institutions":[{"id":"https://openalex.org/I142263535","display_name":"University of Nottingham","ror":"https://ror.org/01ee9ar58","country_code":"GB","type":"education","lineage":["https://openalex.org/I142263535"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Natalio Krasnogor","raw_affiliation_strings":["University of Nottingham, Nottingham, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Nottingham, Nottingham, United Kingdom","institution_ids":["https://openalex.org/I142263535"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.8265,"has_fulltext":false,"cited_by_count":56,"citation_normalized_percentile":{"value":0.90945049,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"346","last_page":"353"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cardinality","display_name":"Cardinality (data modeling)","score":0.6941245198249817},{"id":"https://openalex.org/keywords/reduction","display_name":"Reduction (mathematics)","score":0.6734599471092224},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5626055598258972},{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.5600519776344299},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5500667095184326},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5465970635414124},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5149136781692505},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.49492019414901733},{"id":"https://openalex.org/keywords/alphabet","display_name":"Alphabet","score":0.4671819806098938},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.32964709401130676},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.31551265716552734},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2648611068725586}],"concepts":[{"id":"https://openalex.org/C87117476","wikidata":"https://www.wikidata.org/wiki/Q362383","display_name":"Cardinality (data modeling)","level":2,"score":0.6941245198249817},{"id":"https://openalex.org/C111335779","wikidata":"https://www.wikidata.org/wiki/Q3454686","display_name":"Reduction (mathematics)","level":2,"score":0.6734599471092224},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5626055598258972},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.5600519776344299},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5500667095184326},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5465970635414124},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5149136781692505},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.49492019414901733},{"id":"https://openalex.org/C112876837","wikidata":"https://www.wikidata.org/wiki/Q837518","display_name":"Alphabet","level":2,"score":0.4671819806098938},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.32964709401130676},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.31551265716552734},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2648611068725586},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/1276958.1277033","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1276958.1277033","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th annual conference on Genetic and evolutionary computation","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.93.6528","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.93.6528","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.illigal.uiuc.edu/pub/papers/IlliGALs/2007015.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.8100000023841858}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320324","display_name":"University of Nottingham","ror":"https://ror.org/01ee9ar58"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320337367","display_name":"Division of Materials Research","ror":"https://ror.org/01pc7k308"},{"id":"https://openalex.org/F4320337525","display_name":"Air Force Materiel Command","ror":"https://ror.org/006gmme17"},{"id":"https://openalex.org/F4320338279","display_name":"Air Force Office of Scientific Research","ror":"https://ror.org/011e9bt93"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W190638014","https://openalex.org/W1481729573","https://openalex.org/W1504694836","https://openalex.org/W1511493290","https://openalex.org/W1540706608","https://openalex.org/W1564135785","https://openalex.org/W1587610203","https://openalex.org/W1588026767","https://openalex.org/W1592894394","https://openalex.org/W1636794405","https://openalex.org/W1671614046","https://openalex.org/W1896955993","https://openalex.org/W1912123407","https://openalex.org/W1981853347","https://openalex.org/W1996435828","https://openalex.org/W1997075303","https://openalex.org/W2005946684","https://openalex.org/W2023037135","https://openalex.org/W2031084895","https://openalex.org/W2044154133","https://openalex.org/W2054658115","https://openalex.org/W2084902519","https://openalex.org/W2099111195","https://openalex.org/W2099254366","https://openalex.org/W2103967716","https://openalex.org/W2116449290","https://openalex.org/W2123504579","https://openalex.org/W2125055259","https://openalex.org/W2125652418","https://openalex.org/W2129448010","https://openalex.org/W2134912352","https://openalex.org/W2139415631","https://openalex.org/W2147209844","https://openalex.org/W2153187042","https://openalex.org/W2156728410","https://openalex.org/W2163822209","https://openalex.org/W2602753196","https://openalex.org/W2912934387","https://openalex.org/W4285719527","https://openalex.org/W6683225304","https://openalex.org/W7055702063"],"related_works":["https://openalex.org/W2002177687","https://openalex.org/W2058438338","https://openalex.org/W2019471580","https://openalex.org/W2941284322","https://openalex.org/W3176621072","https://openalex.org/W4224920876","https://openalex.org/W2168299207","https://openalex.org/W4308671316","https://openalex.org/W2920945101","https://openalex.org/W12413374"],"abstract_inverted_index":{"This":[0,83],"paper":[1],"focuses":[2],"on":[3,59,111],"automated":[4,101],"procedures":[5],"to":[6,73,94,169,181],"reduce":[7],"the":[8,17,21,44,60,63,112,116,121,124,134,137,147,166],"dimensionality":[9,53],"of":[10,24,32,46,62,90,120,149],"protein":[11,26,76,125,173],"structure":[12,126,174],"prediction":[13,175],"datasets":[14],"by":[15,87,106],"simplifying":[16],"way":[18],"in":[19],"which":[20,69],"primary":[22],"sequence":[23],"a":[25,75,79,88,107,159],"is":[27,70,104],"represented.":[28],"The":[29,52],"potential":[30],"benefits":[31],"this":[33,150],"procedure":[34,55,103],"are":[35,179],"faster":[36],"and":[37,49,97,123,145],"easier":[38],"learning":[39,162],"process":[40,151],"as":[41,43],"well":[42],"generation":[45],"more":[47],"compact":[48],"human-readable":[50],"classifiers.":[51],"reduction":[54,61,84,102],"we":[56],"propose":[57],"consists":[58],"20-letter":[64],"amino":[65],"acid":[66],"(AA)":[67],"alphabet,":[68],"normally":[71],"used":[72,165],"specify":[74],"sequence,":[77],"into":[78,154],"lower":[80],"cardinality":[81],"alphabet.":[82],"comes":[85],"about":[86],"clustering":[89],"AA":[91],"types":[92],"accordingly":[93],"their":[95],"physical":[96],"chemical":[98],"similarity.":[99],"Our":[100],"guided":[105],"fitness":[108],"function":[109],"based":[110],"Mutual":[113],"Information":[114],"between":[115],"AA-based":[117],"input":[118],"attributes":[119],"dataset":[122],"feature":[127],"that":[128],"being":[129],"predicted.":[130],"To":[131],"search":[132],"for":[133,172],"optimal":[135],"reduction,":[136],"Extended":[138],"Compact":[139],"Genetic":[140],"Algorithm":[141],"(ECGA)":[142],"was":[143],"used,":[144],"afterwards":[146],"results":[148,178],"were":[152],"fed":[153],"(and":[155],"validated":[156],"by)":[157],"BioHEL,":[158],"genetics-based":[160],"machine":[161,184],"technique.":[163],"BioHEL":[164,177],"reduced":[167],"alphabet":[168],"induce":[170],"rules":[171],"features.":[176],"compared":[180],"two":[182],"standard":[183]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":6},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":7}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
