{"id":"https://openalex.org/W2032221896","doi":"https://doi.org/10.1145/1236246.1236278","title":"Shape modeling and matching in identifying protein structure from low-resolution images","display_name":"Shape modeling and matching in identifying protein structure from low-resolution images","publication_year":2007,"publication_date":"2007-06-04","ids":{"openalex":"https://openalex.org/W2032221896","doi":"https://doi.org/10.1145/1236246.1236278","mag":"2032221896"},"language":"en","primary_location":{"id":"doi:10.1145/1236246.1236278","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1236246.1236278","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2007 ACM symposium on Solid and physical modeling","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110243578","display_name":"Sasakthi S. Abeysinghe","orcid":null},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sasakthi S. Abeysinghe","raw_affiliation_strings":["Washington University in St. Louis","(, Washington University in St. Louis)"],"affiliations":[{"raw_affiliation_string":"Washington University in St. Louis","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"(, Washington University in St. Louis)","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101952408","display_name":"Tao Ju","orcid":"https://orcid.org/0000-0002-1848-1012"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tao Ju","raw_affiliation_strings":["Washington University in St. Louis","(, Washington University in St. Louis)"],"affiliations":[{"raw_affiliation_string":"Washington University in St. Louis","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"(, Washington University in St. Louis)","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049689333","display_name":"Wah Chiu","orcid":"https://orcid.org/0000-0002-8910-3078"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wah Chiu","raw_affiliation_strings":["Baylor College of Medicine"],"affiliations":[{"raw_affiliation_string":"Baylor College of Medicine","institution_ids":["https://openalex.org/I181547552"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055564291","display_name":"Matthew L. Baker","orcid":"https://orcid.org/0000-0001-9039-8523"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew Baker","raw_affiliation_strings":["Baylor College of Medicine"],"affiliations":[{"raw_affiliation_string":"Baylor College of Medicine","institution_ids":["https://openalex.org/I181547552"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5110243578"],"corresponding_institution_ids":["https://openalex.org/I204465549"],"apc_list":null,"apc_paid":null,"fwci":0.3288,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.61409214,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"223","last_page":"232"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10627","display_name":"Advanced Image and Video Retrieval Techniques","score":0.9828000068664551,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6373702883720398},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5258976817131042},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4957340657711029},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.47779494524002075},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4766879081726074},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.47007375955581665},{"id":"https://openalex.org/keywords/correspondence-problem","display_name":"Correspondence problem","score":0.465331494808197},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4193729758262634},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.33861303329467773},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23508989810943604}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6373702883720398},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5258976817131042},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4957340657711029},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.47779494524002075},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4766879081726074},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.47007375955581665},{"id":"https://openalex.org/C3004257","wikidata":"https://www.wikidata.org/wiki/Q17084606","display_name":"Correspondence problem","level":2,"score":0.465331494808197},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4193729758262634},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.33861303329467773},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23508989810943604},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/1236246.1236278","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1236246.1236278","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2007 ACM symposium on Solid and physical modeling","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.76.7848","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.76.7848","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.wustl.edu/~taoju/research/shapematch-final.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1486218565","https://openalex.org/W1548178570","https://openalex.org/W1598801010","https://openalex.org/W1682524082","https://openalex.org/W1789330734","https://openalex.org/W1910918478","https://openalex.org/W1963844724","https://openalex.org/W1966323820","https://openalex.org/W1975844474","https://openalex.org/W1977866540","https://openalex.org/W1999613945","https://openalex.org/W2001956250","https://openalex.org/W2009796613","https://openalex.org/W2010209818","https://openalex.org/W2010541316","https://openalex.org/W2020481171","https://openalex.org/W2020669016","https://openalex.org/W2021122545","https://openalex.org/W2026573466","https://openalex.org/W2035143052","https://openalex.org/W2042864201","https://openalex.org/W2048937426","https://openalex.org/W2051842524","https://openalex.org/W2052624604","https://openalex.org/W2073758233","https://openalex.org/W2077017113","https://openalex.org/W2079859745","https://openalex.org/W2083216665","https://openalex.org/W2095460038","https://openalex.org/W2097904397","https://openalex.org/W2099789128","https://openalex.org/W2109294083","https://openalex.org/W2116888204","https://openalex.org/W2122929441","https://openalex.org/W2125517557","https://openalex.org/W2126359798","https://openalex.org/W2134299061","https://openalex.org/W2136761100","https://openalex.org/W2149007706","https://openalex.org/W2151103935","https://openalex.org/W2152086886","https://openalex.org/W2152475379","https://openalex.org/W2157575450","https://openalex.org/W2162551958","https://openalex.org/W2163312887","https://openalex.org/W2163517496","https://openalex.org/W2165107146","https://openalex.org/W2166912610","https://openalex.org/W6682302528"],"related_works":["https://openalex.org/W1516231500","https://openalex.org/W1972035260","https://openalex.org/W2794488505","https://openalex.org/W4301594054","https://openalex.org/W3125889879","https://openalex.org/W3124422538","https://openalex.org/W2295467472","https://openalex.org/W3046451053","https://openalex.org/W2097909533","https://openalex.org/W3125188128"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3,118],"describe":[4],"a":[5,23,30,33,108,136],"novel,":[6],"shape-modeling":[7,143],"approach":[8,77,144],"to":[9,19,51,79],"recovering":[10],"3D":[11,91],"protein":[12,39,68,140],"structures":[13],"from":[14],"volumetric":[15,35],"images.":[16],"The":[17,72],"input":[18],"our":[20,76],"method":[21],"is":[22,50,78,145],"sequence":[24],"of":[25,37,43,59,75,86,130,138,147],"\u03b1-helices":[26,44],"that":[27,85],"make":[28],"up":[29],"protein,":[31],"and":[32,93,106],"low-resolution":[34],"image":[36],"the":[38,53,56,67,81,90,94,100,116,125,142],"where":[40],"possible":[41],"locations":[42],"have":[45],"been":[46],"detected.":[47],"Our":[48],"task":[49],"identify":[52],"correspondence":[54,82],"between":[55,89],"two":[57],"sets":[58],"helices,":[60],"which":[61],"will":[62],"shed":[63],"light":[64],"on":[65,124],"how":[66],"folds":[69],"in":[70,135,152],"space.":[71],"central":[73],"theme":[74],"cast":[80],"problem":[83],"as":[84,102],"shape":[87],"matching":[88,112],"volume":[92],"1D":[95],"sequence.":[96],"We":[97],"model":[98],"both":[99],"shapes":[101],"attributed":[103],"relational":[104],"graphs,":[105],"formulate":[107],"constrained":[109],"inexact":[110],"graph":[111],"problem.":[113],"To":[114],"compute":[115],"matching,":[117],"developed":[119],"an":[120],"optimal":[121],"algorithm":[122],"based":[123],"A*-search":[126],"with":[127,155],"several":[128],"choices":[129],"heuristic":[131],"functions.":[132],"As":[133],"demonstrated":[134],"suite":[137],"real":[139],"data,":[141],"capable":[146],"correctly":[148],"identifying":[149],"helix":[150],"correspondences":[151],"noise-abundant":[153],"volumes":[154],"minimal":[156],"or":[157],"no":[158],"user":[159],"intervention.":[160]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
