{"id":"https://openalex.org/W2011660696","doi":"https://doi.org/10.1145/1233341.1233383","title":"Finding association rules of <i>cis</i> -regulatory elements involved in alternative splicing","display_name":"Finding association rules of <i>cis</i> -regulatory elements involved in alternative splicing","publication_year":2007,"publication_date":"2007-03-23","ids":{"openalex":"https://openalex.org/W2011660696","doi":"https://doi.org/10.1145/1233341.1233383","mag":"2011660696"},"language":"en","primary_location":{"id":"doi:10.1145/1233341.1233383","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1233341.1233383","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 45th annual southeast regional conference","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100384979","display_name":"Jihye Kim","orcid":"https://orcid.org/0000-0001-8035-8640"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jihye Kim","raw_affiliation_strings":["North Carolina State University, Raleigh, NC","North Carolina State University, Raleigh, NC;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"North Carolina State University, Raleigh, NC","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"North Carolina State University, Raleigh, NC;","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102409872","display_name":"Sihui Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sihui Zhao","raw_affiliation_strings":["North Carolina State University, Raleigh, NC","North Carolina State University, Raleigh, NC;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"North Carolina State University, Raleigh, NC","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"North Carolina State University, Raleigh, NC;","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058462301","display_name":"Steffen Heber","orcid":"https://orcid.org/0000-0002-1050-3635"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steffen Heber","raw_affiliation_strings":["North Carolina State University, Raleigh, NC","North Carolina State University, Raleigh, NC;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"North Carolina State University, Raleigh, NC","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"North Carolina State University, Raleigh, NC;","institution_ids":["https://openalex.org/I137902535"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I137902535"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.09047726,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"232","last_page":"237"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.7681334614753723},{"id":"https://openalex.org/keywords/lagging","display_name":"Lagging","score":0.6666972637176514},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.644599437713623},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.6004272699356079},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5433093309402466},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.45997074246406555},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4432836174964905},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.39335405826568604},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.382453590631485},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.21598035097122192},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.20056045055389404},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.13257166743278503},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09432154893875122}],"concepts":[{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.7681334614753723},{"id":"https://openalex.org/C2776962539","wikidata":"https://www.wikidata.org/wiki/Q6472078","display_name":"Lagging","level":2,"score":0.6666972637176514},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.644599437713623},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.6004272699356079},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5433093309402466},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.45997074246406555},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4432836174964905},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.39335405826568604},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.382453590631485},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.21598035097122192},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.20056045055389404},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.13257166743278503},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09432154893875122},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1233341.1233383","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1233341.1233383","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 45th annual southeast regional conference","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1484413656","https://openalex.org/W1506285740","https://openalex.org/W1906561224","https://openalex.org/W1913751664","https://openalex.org/W1980232128","https://openalex.org/W1986113553","https://openalex.org/W1996423252","https://openalex.org/W1998332407","https://openalex.org/W2023648355","https://openalex.org/W2030969394","https://openalex.org/W2045131720","https://openalex.org/W2070564797","https://openalex.org/W2072088482","https://openalex.org/W2075675982","https://openalex.org/W2076983043","https://openalex.org/W2093456341","https://openalex.org/W2132451711","https://openalex.org/W2134880148","https://openalex.org/W2136145671","https://openalex.org/W2137860515","https://openalex.org/W2149109499","https://openalex.org/W2165372900","https://openalex.org/W2166797651","https://openalex.org/W2169685494","https://openalex.org/W2171945138","https://openalex.org/W6608491780"],"related_works":["https://openalex.org/W2321791250","https://openalex.org/W4213427798","https://openalex.org/W2564462691","https://openalex.org/W2023199111","https://openalex.org/W2065030615","https://openalex.org/W2885403345","https://openalex.org/W2052498125","https://openalex.org/W4387768639","https://openalex.org/W2094867951","https://openalex.org/W1535548930"],"abstract_inverted_index":{"Alternative":[0],"splicing":[1,65,75],"(AS)":[2],"is":[3],"a":[4,72],"major":[5],"mechanism":[6],"to":[7,68],"generate":[8,15],"protein":[9],"diversity.":[10],"A":[11],"single":[12,61],"gene":[13],"might":[14],"hundreds":[16],"or":[17],"even":[18],"thousands":[19],"of":[20,39,74],"different":[21],"proteins.":[22],"Recently,":[23],"powerful":[24],"large-scale":[25],"AS":[26,40],"profiling":[27],"microarrays":[28],"have":[29,46],"been":[30],"developed,":[31],"but":[32],"computational":[33],"methods":[34],"which":[35],"investigate":[36],"the":[37],"regulation":[38],"are":[41,58],"still":[42],"lagging":[43],"behind.":[44],"Researchers":[45],"focused":[47],"on":[48],"finding":[49],"cis-regulatory":[50],"motifs":[51],"in":[52],"pre-mRNA":[53],"sequences.":[54],"However,":[55],"most":[56],"studies":[57],"searching":[59],"for":[60],"motifs,":[62],"while":[63],"many":[64],"events":[66],"seem":[67],"be":[69],"regulated":[70],"by":[71],"combination":[73],"factors.":[76]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
