{"id":"https://openalex.org/W1490578079","doi":"https://doi.org/10.1145/1227161.1402296","title":"Better external memory suffix array construction","display_name":"Better external memory suffix array construction","publication_year":2008,"publication_date":"2008-06-01","ids":{"openalex":"https://openalex.org/W1490578079","doi":"https://doi.org/10.1145/1227161.1402296","mag":"1490578079"},"language":"en","primary_location":{"id":"doi:10.1145/1227161.1402296","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1227161.1402296","pdf_url":null,"source":{"id":"https://openalex.org/S201104086","display_name":"ACM Journal of Experimental Algorithmics","issn_l":"1084-6654","issn":["1084-6654"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Journal of Experimental Algorithmics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5445/ir/1000009446","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046346225","display_name":"Roman Dementiev","orcid":null},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210119349","display_name":"Karlsruhe University of Education","ror":"https://ror.org/01t1kq612","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210119349"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Roman Dementiev","raw_affiliation_strings":["Universit\u00e4t Karlsruhe, Karlsruhe, Germany","Algorithms and Complexity, MPI for Informatics, Max Planck Society"],"affiliations":[{"raw_affiliation_string":"Universit\u00e4t Karlsruhe, Karlsruhe, Germany","institution_ids":["https://openalex.org/I4210119349"]},{"raw_affiliation_string":"Algorithms and Complexity, MPI for Informatics, Max Planck Society","institution_ids":["https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018508280","display_name":"Juha K\u00e4rkk\u00e4inen","orcid":null},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]}],"countries":["DE","FI"],"is_corresponding":false,"raw_author_name":"Juha K\u00e4rkk\u00e4inen","raw_affiliation_strings":["University of Helsinki, Finland","Algorithms and Complexity, MPI for Informatics, Max Planck Society"],"affiliations":[{"raw_affiliation_string":"University of Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Algorithms and Complexity, MPI for Informatics, Max Planck Society","institution_ids":["https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089696208","display_name":"Jens Mehnert","orcid":"https://orcid.org/0000-0002-0079-0036"},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jens Mehnert","raw_affiliation_strings":["Max-Planck-Institut f\u00fcr Informatik, Saarbr\u00fccken, Germany","Algorithms and Complexity, MPI for Informatics, Max Planck Society"],"affiliations":[{"raw_affiliation_string":"Max-Planck-Institut f\u00fcr Informatik, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712"]},{"raw_affiliation_string":"Algorithms and Complexity, MPI for Informatics, Max Planck Society","institution_ids":["https://openalex.org/I149899117"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082922326","display_name":"Peter Sanders","orcid":"https://orcid.org/0000-0003-3330-9349"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210119349","display_name":"Karlsruhe University of Education","ror":"https://ror.org/01t1kq612","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210119349"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Peter Sanders","raw_affiliation_strings":["Universit\u00e4t Karlsruhe, Karlsruhe, Germany","Algorithms and Complexity, MPI for Informatics, Max Planck Society"],"affiliations":[{"raw_affiliation_string":"Universit\u00e4t Karlsruhe, Karlsruhe, Germany","institution_ids":["https://openalex.org/I4210119349"]},{"raw_affiliation_string":"Algorithms and Complexity, MPI for Informatics, Max Planck Society","institution_ids":["https://openalex.org/I149899117"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5046346225"],"corresponding_institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210119349"],"apc_list":null,"apc_paid":null,"fwci":4.0043,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.93211853,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"12","issue":null,"first_page":"1","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12326","display_name":"Network Packet Processing and Optimization","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suffix-array","display_name":"Suffix array","score":0.738608717918396},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6458684206008911},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.45738664269447327},{"id":"https://openalex.org/keywords/compressed-suffix-array","display_name":"Compressed suffix array","score":0.41838404536247253},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.367637574672699},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17629072070121765},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.13416486978530884},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.11539432406425476}],"concepts":[{"id":"https://openalex.org/C2779259728","wikidata":"https://www.wikidata.org/wiki/Q281472","display_name":"Suffix array","level":3,"score":0.738608717918396},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6458684206008911},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.45738664269447327},{"id":"https://openalex.org/C100903775","wikidata":"https://www.wikidata.org/wiki/Q5157028","display_name":"Compressed suffix array","level":4,"score":0.41838404536247253},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.367637574672699},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17629072070121765},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.13416486978530884},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.11539432406425476},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.1145/1227161.1402296","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1227161.1402296","pdf_url":null,"source":{"id":"https://openalex.org/S201104086","display_name":"ACM Journal of Experimental Algorithmics","issn_l":"1084-6654","issn":["1084-6654"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Journal of Experimental Algorithmics","raw_type":"journal-article"},{"id":"pmh:oai:EVASTAR-Karlsruhe.de:1000009446","is_oa":false,"landing_page_url":"https://publikationen.bibliothek.kit.edu/1000009446","pdf_url":null,"source":{"id":"https://openalex.org/S4306401992","display_name":"Repository KITopen (Karlsruhe Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I102335020","host_organization_name":"Karlsruhe Institute of Technology","host_organization_lineage":["https://openalex.org/I102335020"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of experimental algorithmics, 12 (June), Art. No. 3.4","raw_type":"doc-type:article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.141.4839","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.141.4839","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.helsinki.fi/juha.karkkainen/publications/jea06-revised.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.560.7067","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.560.7067","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://algo2.iti.kit.edu/documents/esuffix.pdf","raw_type":"text"},{"id":"pmh:oai:edoc.mpg.de:279183","is_oa":false,"landing_page_url":"http://edoc.mpg.de/279183","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings of the Seventh Workshop on Algorithm Engineering and Experiments and the Second Workshop on Analytic Algorithmics and Combinatorics (ALENEX/ANALCO 2005), SIAM, 86-97 (2005)","raw_type":"Conference-Paper"},{"id":"pmh:oai:pure.mpg.de:item_1328835","is_oa":false,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-000F-25F0-6","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings of the Seventh Workshop on Algorithm Engineering and Experiments and the Second Workshop on Analytic Algorithmics and Combinatorics (ALENEX/ANALCO 2005)","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"doi:10.5445/ir/1000009446","is_oa":true,"landing_page_url":"https://doi.org/10.5445/ir/1000009446","pdf_url":null,"source":{"id":"https://openalex.org/S7407052948","display_name":"KITopen","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"mag:1490578079","is_oa":false,"landing_page_url":"http://dblp.uni-trier.de/db/conf/alenex/alenex2005.html#DementievKMS05","pdf_url":null,"source":{"id":"https://openalex.org/S4306417648","display_name":"Algorithm Engineering and Experimentation","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Algorithm Engineering and Experimentation","raw_type":null}],"best_oa_location":{"id":"doi:10.5445/ir/1000009446","is_oa":true,"landing_page_url":"https://doi.org/10.5445/ir/1000009446","pdf_url":null,"source":{"id":"https://openalex.org/S7407052948","display_name":"KITopen","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W117230746","https://openalex.org/W1487258612","https://openalex.org/W1495956867","https://openalex.org/W1505606212","https://openalex.org/W1512840853","https://openalex.org/W1543263356","https://openalex.org/W1549246599","https://openalex.org/W1557034006","https://openalex.org/W1559384720","https://openalex.org/W1573714593","https://openalex.org/W1578737154","https://openalex.org/W1726445723","https://openalex.org/W1877511701","https://openalex.org/W1968348485","https://openalex.org/W1997688397","https://openalex.org/W2015326607","https://openalex.org/W2017808314","https://openalex.org/W2024147613","https://openalex.org/W2038142281","https://openalex.org/W2067974452","https://openalex.org/W2097199722","https://openalex.org/W2111989602","https://openalex.org/W2114699799","https://openalex.org/W2152486057","https://openalex.org/W2158874082","https://openalex.org/W2161488606","https://openalex.org/W2168286055","https://openalex.org/W4241729224","https://openalex.org/W6654516357"],"related_works":["https://openalex.org/W2158874082","https://openalex.org/W1726445723","https://openalex.org/W1990061958","https://openalex.org/W1608260398","https://openalex.org/W2130564474","https://openalex.org/W2109062349","https://openalex.org/W2087721273","https://openalex.org/W2067974452","https://openalex.org/W2015326607","https://openalex.org/W2570663628","https://openalex.org/W2533248932","https://openalex.org/W2121252285","https://openalex.org/W2024147613","https://openalex.org/W1540616176","https://openalex.org/W1485276510","https://openalex.org/W3080976205","https://openalex.org/W2134283755","https://openalex.org/W2133363953","https://openalex.org/W2059513841","https://openalex.org/W117230746"],"abstract_inverted_index":{"Suffix":[0],"arrays":[1,40,87],"are":[2,72],"a":[3,97,101,109],"simple":[4],"and":[5,22,57,63,115],"powerful":[6],"data":[7,20],"structure":[8],"for":[9,16,41,66,88],"text":[10,18],"processing":[11],"that":[12,44],"can":[13,84],"be":[14],"used":[15],"full":[17],"indexes,":[19],"compression,":[21],"many":[23],"other":[24],"applications,":[25],"in":[26,28,75,94],"particular,":[27],"bioinformatics.":[29],"However,":[30],"so":[31],"far,":[32],"it":[33],"has":[34],"appeared":[35],"prohibitive":[36],"to":[37,92,112],"build":[38],"suffix":[39,67,86],"huge":[42],"inputs":[43,89],"do":[45],"not":[46],"fit":[47],"into":[48],"main":[49],"memory.":[50],"This":[51],"paper":[52],"presents":[53],"design,":[54,113],"analysis,":[55],"implementation,":[56],"experimental":[58],"evaluation":[59],"of":[60,90,103],"several":[61],"new":[62],"improved":[64],"algorithms":[65,71],"array":[68],"construction.":[69],"The":[70],"asymptotically":[73],"optimal":[74],"the":[76],"worst":[77],"case":[78],"or":[79],"on":[80,96],"average.":[81],"Our":[82],"implementation":[83],"construct":[85],"up":[91],"4-GB":[93],"hours":[95],"low-cost":[98],"machine.":[99],"As":[100],"tool":[102],"possible":[104],"independent":[105],"interest,":[106],"we":[107],"present":[108],"systematic":[110],"way":[111],"analyze,":[114],"implement":[116],"pipelined":[117],"algorithms.":[118]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-02-26T08:16:20.718346","created_date":"2025-10-10T00:00:00"}
