{"id":"https://openalex.org/W2086354937","doi":"https://doi.org/10.1145/1227161.1370601","title":"A graph approach to the threshold all-against-all substring matching problem","display_name":"A graph approach to the threshold all-against-all substring matching problem","publication_year":2008,"publication_date":"2008-06-01","ids":{"openalex":"https://openalex.org/W2086354937","doi":"https://doi.org/10.1145/1227161.1370601","mag":"2086354937"},"language":"en","primary_location":{"id":"doi:10.1145/1227161.1370601","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1227161.1370601","pdf_url":null,"source":{"id":"https://openalex.org/S201104086","display_name":"ACM Journal of Experimental Algorithmics","issn_l":"1084-6654","issn":["1084-6654"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Journal of Experimental Algorithmics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080922483","display_name":"Marina Barsky","orcid":null},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Marina Barsky","raw_affiliation_strings":["University of Victoria, Victoria, BC, Canada","University of Victoria , Victoria , BC, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Victoria, Victoria, BC, Canada","institution_ids":["https://openalex.org/I212119943"]},{"raw_affiliation_string":"University of Victoria , Victoria , BC, Canada#TAB#","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063629937","display_name":"Ulrike Stege","orcid":"https://orcid.org/0000-0001-9466-7196"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ulrike Stege","raw_affiliation_strings":["University of Victoria, Victoria, BC, Canada","University of Victoria , Victoria , BC, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Victoria, Victoria, BC, Canada","institution_ids":["https://openalex.org/I212119943"]},{"raw_affiliation_string":"University of Victoria , Victoria , BC, Canada#TAB#","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011013528","display_name":"Alex Thomo","orcid":"https://orcid.org/0000-0002-3020-2258"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Alex Thomo","raw_affiliation_strings":["University of Victoria, Victoria, BC, Canada","University of Victoria , Victoria , BC, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Victoria, Victoria, BC, Canada","institution_ids":["https://openalex.org/I212119943"]},{"raw_affiliation_string":"University of Victoria , Victoria , BC, Canada#TAB#","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033180528","display_name":"Chris Upton","orcid":"https://orcid.org/0000-0002-9019-8967"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Chris Upton","raw_affiliation_strings":["University of Victoria, Victoria, BC, Canada","University of Victoria , Victoria , BC, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Victoria, Victoria, BC, Canada","institution_ids":["https://openalex.org/I212119943"]},{"raw_affiliation_string":"University of Victoria , Victoria , BC, Canada#TAB#","institution_ids":["https://openalex.org/I212119943"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5080922483"],"corresponding_institution_ids":["https://openalex.org/I212119943"],"apc_list":null,"apc_paid":null,"fwci":0.572,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.78136967,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"12","issue":null,"first_page":"1","last_page":"26"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12326","display_name":"Network Packet Processing and Optimization","score":0.9785000085830688,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/substring","display_name":"Substring","score":0.9246761798858643},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5215128064155579},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4906090795993805},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48971155285835266},{"id":"https://openalex.org/keywords/upper-and-lower-bounds","display_name":"Upper and lower bounds","score":0.4449031949043274},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.44408467411994934},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4218197464942932},{"id":"https://openalex.org/keywords/running-time","display_name":"Running time","score":0.41084837913513184},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.3926267623901367},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3243097960948944},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.14201363921165466},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.08152437210083008}],"concepts":[{"id":"https://openalex.org/C182407805","wikidata":"https://www.wikidata.org/wiki/Q2626534","display_name":"Substring","level":3,"score":0.9246761798858643},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5215128064155579},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4906090795993805},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48971155285835266},{"id":"https://openalex.org/C77553402","wikidata":"https://www.wikidata.org/wiki/Q13222579","display_name":"Upper and lower bounds","level":2,"score":0.4449031949043274},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.44408467411994934},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4218197464942932},{"id":"https://openalex.org/C3017489831","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Running time","level":2,"score":0.41084837913513184},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.3926267623901367},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3243097960948944},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.14201363921165466},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.08152437210083008},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1227161.1370601","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1227161.1370601","pdf_url":null,"source":{"id":"https://openalex.org/S201104086","display_name":"ACM Journal of Experimental Algorithmics","issn_l":"1084-6654","issn":["1084-6654"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Journal of Experimental Algorithmics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W938539187","https://openalex.org/W1501400124","https://openalex.org/W1588822927","https://openalex.org/W1694705699","https://openalex.org/W1834151548","https://openalex.org/W1852889450","https://openalex.org/W1987042978","https://openalex.org/W1990061958","https://openalex.org/W1998048394","https://openalex.org/W1998300401","https://openalex.org/W2004215917","https://openalex.org/W2007661494","https://openalex.org/W2011632873","https://openalex.org/W2017265532","https://openalex.org/W2028445324","https://openalex.org/W2030701413","https://openalex.org/W2056002855","https://openalex.org/W2058759221","https://openalex.org/W2084908610","https://openalex.org/W2097571242","https://openalex.org/W2107248520","https://openalex.org/W2124115696","https://openalex.org/W2169465650","https://openalex.org/W2610179052","https://openalex.org/W2647121973"],"related_works":["https://openalex.org/W1583922594","https://openalex.org/W1542422837","https://openalex.org/W1974038726","https://openalex.org/W2998448420","https://openalex.org/W1598224733","https://openalex.org/W4304731099","https://openalex.org/W4280502676","https://openalex.org/W2000769876","https://openalex.org/W204227468","https://openalex.org/W2110344843"],"abstract_inverted_index":{"We":[0,72],"present":[1],"a":[2,61,83],"novel":[3],"graph":[4],"model":[5],"and":[6,26],"an":[7],"efficient":[8],"algorithm":[9,48,81],"for":[10,30,69],"solving":[11],"the":[12,50,65],"\u201cthreshold":[13],"all":[14,31],"against":[15],"all\u201d":[16],"problem,":[17],"which":[18,59],"involves":[19],"searching":[20],"two":[21],"strings":[22],"(with":[23],"length":[24,37],"M":[25],"N":[27],",":[28,41],"respectively)":[29],"maximal":[32],"approximate":[33],"substring":[34],"matches":[35],"of":[36],"at":[38],"least":[39],"S":[40],"with":[42],"up":[43],"to":[44],"K":[45],"differences.":[46],"Our":[47],"solves":[49],"problem":[51],"in":[52,78],"time":[53],"O":[54],"(":[55],"MNK":[56],"3":[57],"),":[58],"is":[60],"considerable":[62],"improvement":[63],"over":[64],"previous":[66],"known":[67],"bound":[68],"this":[70],"problem.":[71],"also":[73],"provide":[74],"experimental":[75],"evidence":[76],"that,":[77],"practice,":[79],"our":[80],"exhibits":[82],"better":[84],"performance":[85],"than":[86],"its":[87],"worst-case":[88],"running":[89],"time.":[90]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
