{"id":"https://openalex.org/W2032660591","doi":"https://doi.org/10.1145/1217728.1217739","title":"Achieving I/O improvements in a mass spectral database","display_name":"Achieving I/O improvements in a mass spectral database","publication_year":2006,"publication_date":"2006-12-01","ids":{"openalex":"https://openalex.org/W2032660591","doi":"https://doi.org/10.1145/1217728.1217739","mag":"2032660591"},"language":"en","primary_location":{"id":"doi:10.1145/1217728.1217739","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1217728.1217739","pdf_url":null,"source":{"id":"https://openalex.org/S4210181451","display_name":"XRDS Crossroads The ACM Magazine for Students","issn_l":"1528-4972","issn":["1528-4972","1528-4980"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"XRDS: Crossroads, The ACM Magazine for Students","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060254998","display_name":"Eric Puryear","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eric Puryear","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013198431","display_name":"Jennifer Van Puymbrouck","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jennifer Van Puymbrouck","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015805735","display_name":"David Angulo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David Sigfredo Angulo","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037097646","display_name":"Kevin Drew","orcid":"https://orcid.org/0000-0002-1260-4413"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kevin Drew","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007897306","display_name":"Lee Ann Hollenbeck","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lee Ann Hollenbeck","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077075205","display_name":"Dominic Battr\u00e9","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dominic Battre","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002081134","display_name":"Alex Schilling","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Alex Schilling","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045940178","display_name":"David Jabon","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David Jabon","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006991539","display_name":"Gregor von Laszewski","orcid":"https://orcid.org/0000-0001-9558-179X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gregor von Laszewski","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10722405,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"13","issue":"2","first_page":"11","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9404000043869019,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9404000043869019,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.932699978351593,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9103999733924866,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6776790022850037},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6729274392127991},{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.5897874236106873},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.5599685907363892},{"id":"https://openalex.org/keywords/programmer","display_name":"Programmer","score":0.4734606146812439},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.23790934681892395},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11001843214035034}],"concepts":[{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6776790022850037},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6729274392127991},{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.5897874236106873},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.5599685907363892},{"id":"https://openalex.org/C2778514511","wikidata":"https://www.wikidata.org/wiki/Q1374194","display_name":"Programmer","level":2,"score":0.4734606146812439},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.23790934681892395},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11001843214035034},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1217728.1217739","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1217728.1217739","pdf_url":null,"source":{"id":"https://openalex.org/S4210181451","display_name":"XRDS Crossroads The ACM Magazine for Students","issn_l":"1528-4972","issn":["1528-4972","1528-4980"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"XRDS: Crossroads, The ACM Magazine for Students","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5299999713897705}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320338284","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1971887998","https://openalex.org/W1979853788","https://openalex.org/W1981593008","https://openalex.org/W2001848433","https://openalex.org/W2026465178","https://openalex.org/W2070830418","https://openalex.org/W2146103026","https://openalex.org/W2480069414","https://openalex.org/W4243665538"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W107105315","https://openalex.org/W4367156293","https://openalex.org/W1584537303","https://openalex.org/W4388155270","https://openalex.org/W1872724644","https://openalex.org/W2750549761","https://openalex.org/W2379153735","https://openalex.org/W28826848","https://openalex.org/W2211967836"],"abstract_inverted_index":{"Research":[0],"in":[1,34,95,113],"proteomics":[2],"has":[3,108],"created":[4,89,154],"two":[5],"significant":[6],"needs:":[7],"the":[8,22,26,35,48,59,72,110,118,126,203],"need":[9,23,76],"for":[10,24],"an":[11,43,159],"accurate":[12,171],"public":[13],"database":[14,46,145,163],"of":[15,30,37,42,50,63,121,146,152,164,222],"empirically":[16,44,147],"derived":[17,45,148],"mass":[18,31,64,122,135,150,184],"spectrum":[19,166],"information":[20,167],"and":[21,28,39,55,61,80,86,105,133,161,188,211,224],"managing":[25],"I/O":[27,60,177,187,206],"organization":[29,62],"spectrometry":[32,65,123,136,185],"data":[33,66,186,189,196],"form":[36],"files":[38],"structures.":[40],"Lack":[41],"limits":[47],"ability":[49],"proteomic":[51],"researchers":[52,157,192],"to":[53,71,77,116,130,155,168,193,216],"identify":[54],"study":[56],"proteins.":[57],"Managing":[58],"is":[67,143],"often":[68],"time-consuming":[69],"due":[70],"many":[73],"fields":[74],"that":[75,182],"be":[78,217],"set":[79],"retrieved.":[81],"As":[82],"a":[83,144,180,220],"result,":[84],"incompatibilities":[85],"inefficiencies":[87],"are":[88,128],"by":[90],"each":[91],"programmer":[92],"handling":[93],"this":[94],"his":[96],"or":[97],"her":[98],"own":[99],"way.":[100],"Until":[101],"recently,":[102],"storage":[103],"space":[104],"computing":[106],"power":[107],"been":[109],"limiting":[111],"factor":[112],"developing":[114],"tools":[115],"handle":[117],"vast":[119],"amount":[120],"information.":[124],"Now":[125],"resources":[127],"available":[129],"store,":[131],"organize,":[132],"analyze":[134],"information.The":[137],"Illinois":[138],"Bio-Grid":[139],"Mass":[140,175,204],"Spectrometry":[141,176,205],"Database":[142],"tandem":[149],"spectra":[151],"peptides":[153],"provide":[156],"with":[158],"organized":[160],"searchable":[162],"curated":[165],"allow":[169],"more":[170],"protein":[172],"identification.":[173],"The":[174],"Project":[178,207],"creates":[179],"framework":[181],"handles":[183],"organization,":[190],"allowing":[191,214],"concentrate":[194],"on":[195,219],"analysis":[197],"rather":[198],"than":[199],"I/O.":[200],"In":[201],"addition,":[202],"leverages":[208],"several":[209],"cross-platform":[210],"portability-enhancing":[212],"technologies,":[213],"it":[215],"utilized":[218],"variety":[221],"hardware":[223],"operating":[225],"systems.":[226]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}