{"id":"https://openalex.org/W2034732817","doi":"https://doi.org/10.1145/1150402.1150489","title":"Automatic mining of fruit fly embryo images","display_name":"Automatic mining of fruit fly embryo images","publication_year":2006,"publication_date":"2006-08-20","ids":{"openalex":"https://openalex.org/W2034732817","doi":"https://doi.org/10.1145/1150402.1150489","mag":"2034732817"},"language":"en","primary_location":{"id":"doi:10.1145/1150402.1150489","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1150402.1150489","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 12th ACM SIGKDD international conference on Knowledge discovery and data mining","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083649006","display_name":"Jia-Yu Pan","orcid":"https://orcid.org/0009-0005-6700-908X"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jia-Yu Pan","raw_affiliation_strings":["Carnegie Mellon University, Pittsburgh, PA","Carnegie-Mellon University, Pittsburgh, PA"],"affiliations":[{"raw_affiliation_string":"Carnegie Mellon University, Pittsburgh, PA","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Carnegie-Mellon University, Pittsburgh, PA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016080726","display_name":"Andr\u00e9 G. R. Balan","orcid":null},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Andr\u00e9 G. R. Balan","raw_affiliation_strings":["Universidade de Sao Paulo, Sao Paulo, Brazil"],"affiliations":[{"raw_affiliation_string":"Universidade de Sao Paulo, Sao Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009547049","display_name":"Eric P. Xing","orcid":"https://orcid.org/0009-0005-9158-4201"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric P. Xing","raw_affiliation_strings":["Carnegie Mellon University, Pittsburgh, PA","Carnegie-Mellon University, Pittsburgh, PA"],"affiliations":[{"raw_affiliation_string":"Carnegie Mellon University, Pittsburgh, PA","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Carnegie-Mellon University, Pittsburgh, PA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014783020","display_name":"Agma J. M. Traina","orcid":"https://orcid.org/0000-0003-4929-7258"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Agma Juci Machado Traina","raw_affiliation_strings":["Universidade de Sao Paulo, Sao Paulo, Brazil"],"affiliations":[{"raw_affiliation_string":"Universidade de Sao Paulo, Sao Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035605036","display_name":"Christos Faloutsos","orcid":"https://orcid.org/0000-0003-2996-9790"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christos Faloutsos","raw_affiliation_strings":["Carnegie Mellon University, Pittsburgh, PA","Carnegie-Mellon University, Pittsburgh, PA"],"affiliations":[{"raw_affiliation_string":"Carnegie Mellon University, Pittsburgh, PA","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Carnegie-Mellon University, Pittsburgh, PA","institution_ids":["https://openalex.org/I74973139"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5083649006"],"corresponding_institution_ids":["https://openalex.org/I74973139"],"apc_list":null,"apc_paid":null,"fwci":2.7242,"has_fulltext":false,"cited_by_count":47,"citation_normalized_percentile":{"value":0.89736363,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"693","last_page":"698"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10616","display_name":"Smart Agriculture and AI","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9807999730110168,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6739046573638916},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6321207284927368},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.571656346321106},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.541757345199585},{"id":"https://openalex.org/keywords/on-the-fly","display_name":"On the fly","score":0.5329101085662842},{"id":"https://openalex.org/keywords/disjoint-sets","display_name":"Disjoint sets","score":0.49954986572265625},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.45018470287323},{"id":"https://openalex.org/keywords/embryo","display_name":"Embryo","score":0.4433838725090027},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.39410123229026794},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39047902822494507},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3453814387321472},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19435900449752808},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08200216293334961},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.06953880190849304}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6739046573638916},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6321207284927368},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.571656346321106},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.541757345199585},{"id":"https://openalex.org/C2781020372","wikidata":"https://www.wikidata.org/wiki/Q533093","display_name":"On the fly","level":2,"score":0.5329101085662842},{"id":"https://openalex.org/C45340560","wikidata":"https://www.wikidata.org/wiki/Q215382","display_name":"Disjoint sets","level":2,"score":0.49954986572265625},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.45018470287323},{"id":"https://openalex.org/C196843134","wikidata":"https://www.wikidata.org/wiki/Q33196","display_name":"Embryo","level":2,"score":0.4433838725090027},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.39410123229026794},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39047902822494507},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3453814387321472},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19435900449752808},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08200216293334961},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.06953880190849304},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1145/1150402.1150489","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1150402.1150489","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 12th ACM SIGKDD international conference on Knowledge discovery and data mining","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.332.2263","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.332.2263","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.sailing.cs.cmu.edu/pdf/2006/jiayukdd06.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.61.2377","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.61.2377","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.cmu.edu/%7Eepxing/papers/KDD06-FEMine.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.72.3548","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.72.3548","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.cmu.edu/~christos/PUBLICATIONS/kdd06FEMine-ps.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5600000023841858,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1548802052","https://openalex.org/W1857352599","https://openalex.org/W2006771905","https://openalex.org/W2046799970","https://openalex.org/W2101094851","https://openalex.org/W2131938193","https://openalex.org/W2135283180","https://openalex.org/W2136573268","https://openalex.org/W2138745909","https://openalex.org/W2139212933","https://openalex.org/W2153635508","https://openalex.org/W2158092584","https://openalex.org/W2160923730","https://openalex.org/W2798823272","https://openalex.org/W3099514962","https://openalex.org/W3120421331","https://openalex.org/W3193477162","https://openalex.org/W4205778870","https://openalex.org/W4249145429","https://openalex.org/W6680314706","https://openalex.org/W6738852829","https://openalex.org/W6776535907"],"related_works":["https://openalex.org/W4256429076","https://openalex.org/W1971174658","https://openalex.org/W2099195351","https://openalex.org/W2348092930","https://openalex.org/W2012063272","https://openalex.org/W3129272755","https://openalex.org/W2320619678","https://openalex.org/W2138685729","https://openalex.org/W26693340","https://openalex.org/W1963777171"],"abstract_inverted_index":{"We":[0,11],"present":[1],"FEMine,":[2],"an":[3,73],"automatic":[4],"system":[5,31],"for":[6],"image-based":[7],"gene":[8,57],"expression":[9],"analysis.":[10],"perform":[12],"experiments":[13],"on":[14],"the":[15,48,61],"largest":[16],"publicly":[17],"available":[18],"collection":[19],"of":[20,45,50,56,72],"Drosophila":[21],"ISH":[22],"(in":[23],"situ":[24],"hybridization)":[25],"images,":[26],"showing":[27],"that":[28],"our":[29],"FEMine":[30,46],"achieves":[32],"excellent":[33],"performance":[34],"in":[35,60,68,76],"classification,":[36],"clustering,":[37],"and":[38],"content-based":[39],"image":[40],"retrieval.":[41],"The":[42],"major":[43],"innovation":[44],"is":[47],"use":[49],"automatically":[51],"discovered":[52],"latent":[53],"spatial":[54],"\"themes\"":[55],"expressions,":[58],"LGEs,":[59],"whole-embryo":[62],"context,":[63],"as":[64],"opposed":[65],"to":[66],"patterns":[67],"nearly":[69],"disjoint":[70],"portions":[71],"embryo":[74],"proposed":[75],"previous":[77],"methods.":[78]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
