{"id":"https://openalex.org/W2066506515","doi":"https://doi.org/10.1145/1150402.1150418","title":"NeMoFinder","display_name":"NeMoFinder","publication_year":2006,"publication_date":"2006-08-20","ids":{"openalex":"https://openalex.org/W2066506515","doi":"https://doi.org/10.1145/1150402.1150418","mag":"2066506515"},"language":"en","primary_location":{"id":"doi:10.1145/1150402.1150418","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1150402.1150418","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 12th ACM SIGKDD international conference on Knowledge discovery and data mining","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100457173","display_name":"Jin Chen","orcid":"https://orcid.org/0000-0002-6634-4397"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Jin Chen","raw_affiliation_strings":["National University of Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051209739","display_name":"Wynne Hsu","orcid":"https://orcid.org/0000-0002-4142-8893"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Wynne Hsu","raw_affiliation_strings":["National University of Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019988958","display_name":"Mong Li Lee","orcid":"https://orcid.org/0000-0002-9636-388X"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Mong Li Lee","raw_affiliation_strings":["National University of Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090171111","display_name":"See-Kiong Ng","orcid":"https://orcid.org/0000-0001-6565-7511"},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"See-Kiong Ng","raw_affiliation_strings":["Institute for Inforcomm Research, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Inforcomm Research, Singapore","institution_ids":["https://openalex.org/I3005327000"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":11.8568,"has_fulltext":false,"cited_by_count":115,"citation_normalized_percentile":{"value":0.98866348,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":null,"issue":null,"first_page":"106","last_page":"115"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7264246344566345},{"id":"https://openalex.org/keywords/network-motif","display_name":"Network motif","score":0.6928942799568176},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.685721755027771},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.593866229057312},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.5512248277664185},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5492050051689148},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45713862776756287},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.425326406955719},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32314562797546387},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16752463579177856},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07992628216743469}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7264246344566345},{"id":"https://openalex.org/C60723933","wikidata":"https://www.wikidata.org/wiki/Q7001080","display_name":"Network motif","level":3,"score":0.6928942799568176},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.685721755027771},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.593866229057312},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.5512248277664185},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5492050051689148},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45713862776756287},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.425326406955719},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32314562797546387},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16752463579177856},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07992628216743469},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1150402.1150418","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1150402.1150418","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 12th ACM SIGKDD international conference on Knowledge discovery and data mining","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W284704","https://openalex.org/W230663966","https://openalex.org/W1507763859","https://openalex.org/W1641749581","https://openalex.org/W2065304353","https://openalex.org/W2099913238","https://openalex.org/W2113654464","https://openalex.org/W2118349699","https://openalex.org/W2124533460","https://openalex.org/W2137786672","https://openalex.org/W2144344817","https://openalex.org/W2145100112","https://openalex.org/W2150926065","https://openalex.org/W2151326548","https://openalex.org/W2152495216","https://openalex.org/W2153624566","https://openalex.org/W2156737316","https://openalex.org/W2162481448","https://openalex.org/W2168209541","https://openalex.org/W2170726034","https://openalex.org/W4236956086"],"related_works":["https://openalex.org/W3079957389","https://openalex.org/W2796517744","https://openalex.org/W15348386","https://openalex.org/W2807926763","https://openalex.org/W2951915565","https://openalex.org/W4205962317","https://openalex.org/W2090574217","https://openalex.org/W2143557297","https://openalex.org/W3119507950","https://openalex.org/W2135602072"],"abstract_inverted_index":{"Recent":[0],"works":[1],"in":[2,12,75,93],"network":[3,10,34,49,59,68,91,107],"analysis":[4],"have":[5],"revealed":[6],"the":[7,17,47,53,85,115],"existence":[8],"of":[9,117],"motifs":[11,50,69,92,108],"biological":[13],"networks":[14],"such":[15,106],"as":[16],"protein-protein":[18],"interaction":[19],"(PPI)":[20],"networks.":[21,78],"However,":[22],"existing":[23],"motif":[24,60],"mining":[25],"algorithms":[26],"are":[27,71],"not":[28],"sufficiently":[29],"scalable":[30],"to":[31,44,89],"find":[32],"meso-scale":[33,67],"motifs.":[35],"Also,":[36],"there":[37],"has":[38],"been":[39],"little":[40],"or":[41],"no":[42],"work":[43],"systematically":[45,111],"exploit":[46],"extracted":[48],"for":[51,84,113],"dissecting":[52],"vast":[54],"interactomes.We":[55],"describe":[56],"an":[57],"efficient":[58],"discovery":[61],"algorithm,":[62],"NeMoFinder,":[63,80],"that":[64,70,105,120],"can":[65,109],"mine":[66],"repeated":[72],"and":[73],"unique":[74],"large":[76,95],"PPI":[77,100,118],"Using":[79],"we":[81],"successfully":[82],"discovered,":[83],"first":[86],"time,":[87],"up":[88],"size-12":[90],"a":[94],"whole-genome":[96],"S.":[97],"cerevisiae":[98],"(Yeast)":[99],"network.":[101],"We":[102],"also":[103],"show":[104],"be":[110],"exploited":[112],"indexing":[114],"reliability":[116],"data":[119],"were":[121],"generated":[122],"via":[123],"highly":[124],"erroneous":[125],"high-throughput":[126],"experimental":[127],"methods.":[128]},"counts_by_year":[{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":9}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2016-06-24T00:00:00"}
