{"id":"https://openalex.org/W2151650437","doi":"https://doi.org/10.1145/1149993.1150015","title":"Integrating bioinformatic data sources over the SFSU ER design tools XML databus","display_name":"Integrating bioinformatic data sources over the SFSU ER design tools XML databus","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W2151650437","doi":"https://doi.org/10.1145/1149993.1150015","mag":"2151650437"},"language":"en","primary_location":{"id":"doi:10.1145/1149993.1150015","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1149993.1150015","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Workshop proceedings of the sixth international conference on Web engineering  - ICWE '06","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100351175","display_name":"Yan Liu","orcid":"https://orcid.org/0000-0003-4242-4840"},"institutions":[{"id":"https://openalex.org/I71838634","display_name":"San Francisco State University","ror":"https://ror.org/05ykr0121","country_code":"US","type":"education","lineage":["https://openalex.org/I71838634"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yan Liu","raw_affiliation_strings":["San Francisco State University, San Francisco, CA"],"affiliations":[{"raw_affiliation_string":"San Francisco State University, San Francisco, CA","institution_ids":["https://openalex.org/I71838634"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084744751","display_name":"Sorna Vincent","orcid":null},"institutions":[{"id":"https://openalex.org/I71838634","display_name":"San Francisco State University","ror":"https://ror.org/05ykr0121","country_code":"US","type":"education","lineage":["https://openalex.org/I71838634"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sorna Vincent","raw_affiliation_strings":["San Francisco State University, San Francisco, CA"],"affiliations":[{"raw_affiliation_string":"San Francisco State University, San Francisco, CA","institution_ids":["https://openalex.org/I71838634"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083824077","display_name":"Marguerite C. Murphy","orcid":null},"institutions":[{"id":"https://openalex.org/I71838634","display_name":"San Francisco State University","ror":"https://ror.org/05ykr0121","country_code":"US","type":"education","lineage":["https://openalex.org/I71838634"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marguerite C. Murphy","raw_affiliation_strings":["San Francisco State University, San Francisco, CA"],"affiliations":[{"raw_affiliation_string":"San Francisco State University, San Francisco, CA","institution_ids":["https://openalex.org/I71838634"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100351175"],"corresponding_institution_ids":["https://openalex.org/I71838634"],"apc_list":null,"apc_paid":null,"fwci":0.6298,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.82315522,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"19","last_page":"19"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.967199981212616,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.9603999853134155,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8358278870582581},{"id":"https://openalex.org/keywords/xml-database","display_name":"XML database","score":0.6935222148895264},{"id":"https://openalex.org/keywords/efficient-xml-interchange","display_name":"Efficient XML Interchange","score":0.5892427563667297},{"id":"https://openalex.org/keywords/xml-validation","display_name":"XML validation","score":0.5871580243110657},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.582435131072998},{"id":"https://openalex.org/keywords/streaming-xml","display_name":"Streaming XML","score":0.5530399680137634},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5401991009712219},{"id":"https://openalex.org/keywords/xml-schema-editor","display_name":"XML Schema Editor","score":0.5257713794708252},{"id":"https://openalex.org/keywords/xml-framework","display_name":"XML framework","score":0.5069718360900879},{"id":"https://openalex.org/keywords/xml-schema","display_name":"XML Schema (W3C)","score":0.45264649391174316},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4102400243282318},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.37310993671417236},{"id":"https://openalex.org/keywords/xml-encryption","display_name":"XML Encryption","score":0.3341969847679138},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.296097993850708}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8358278870582581},{"id":"https://openalex.org/C183068750","wikidata":"https://www.wikidata.org/wiki/Q357393","display_name":"XML database","level":3,"score":0.6935222148895264},{"id":"https://openalex.org/C11508877","wikidata":"https://www.wikidata.org/wiki/Q1124477","display_name":"Efficient XML Interchange","level":3,"score":0.5892427563667297},{"id":"https://openalex.org/C55348073","wikidata":"https://www.wikidata.org/wiki/Q595926","display_name":"XML validation","level":3,"score":0.5871580243110657},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.582435131072998},{"id":"https://openalex.org/C44883583","wikidata":"https://www.wikidata.org/wiki/Q7622687","display_name":"Streaming XML","level":3,"score":0.5530399680137634},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5401991009712219},{"id":"https://openalex.org/C34716815","wikidata":"https://www.wikidata.org/wiki/Q8042322","display_name":"XML Schema Editor","level":3,"score":0.5257713794708252},{"id":"https://openalex.org/C21761406","wikidata":"https://www.wikidata.org/wiki/Q8042330","display_name":"XML framework","level":3,"score":0.5069718360900879},{"id":"https://openalex.org/C40713593","wikidata":"https://www.wikidata.org/wiki/Q16342","display_name":"XML Schema (W3C)","level":5,"score":0.45264649391174316},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4102400243282318},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.37310993671417236},{"id":"https://openalex.org/C173242113","wikidata":"https://www.wikidata.org/wiki/Q607488","display_name":"XML Encryption","level":4,"score":0.3341969847679138},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.296097993850708}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1149993.1150015","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1149993.1150015","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Workshop proceedings of the sixth international conference on Web engineering  - ICWE '06","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309305","display_name":"San Francisco State University","ror":"https://ror.org/05ykr0121"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":4,"referenced_works":["https://openalex.org/W192428627","https://openalex.org/W1968766436","https://openalex.org/W2163628603","https://openalex.org/W2753710282"],"related_works":["https://openalex.org/W1970085714","https://openalex.org/W56340752","https://openalex.org/W2130593017","https://openalex.org/W2357844625","https://openalex.org/W2038564770","https://openalex.org/W2276215951","https://openalex.org/W2536894089","https://openalex.org/W2047342127","https://openalex.org/W2184732669","https://openalex.org/W2385975321"],"abstract_inverted_index":{"The":[0],"SFSU":[1],"ER":[2,34],"Design":[3],"Tools":[4,70],"were":[5],"developed":[6],"to":[7,23,32,74,85,94,112,142],"support":[8,143],"database":[9],"design":[10,126],"and":[11,25,31,58,93,127,179,185],"data":[12,17,67,88,96,110,147,164,186,202],"integration":[13,144],"over":[14,114,183],"multiple":[15],"implementation":[16,41,66,128],"models.":[18],"These":[19],"tools":[20],"allow":[21],"users":[22],"enter":[24],"view":[26],"Entity":[27],"Relationship":[28],"(ER)":[29],"schemas":[30,35],"translate":[33],"into":[36,89,101,166],"a":[37,76,102,139,167],"variety":[38],"of":[39,129,145,171],"equivalent":[40,154],"schemas,":[42,158],"including":[43],"Relational":[44],"(ANSI":[45],"SQL2),":[46],"Object":[47],"Oriented":[48],"(ODMG":[49],"3.0),":[50],"Spreadsheet":[51],"(Universal":[52],"Relation":[53],"with":[54],"associated":[55],"functional":[56],"dependencies)":[57],"W3C":[59],"XML":[60,91,99,118,131,172],"DTD.":[61],"In":[62,120],"addition,":[63],"for":[64,199],"each":[65],"model,":[68],"the":[69,125,162,189],"generate":[71],"DDL":[72],"statements":[73],"create":[75],"database,":[77],"as":[78,80,136,138],"well":[79,137],"simple":[81],"JDBC/ODBC":[82],"based":[83,117],"code":[84],"dump":[86],"stored":[87],"an":[90,98,115],"file":[92,100],"load":[95],"from":[97,108,188],"database.":[103],"Data":[104],"can":[105],"be":[106],"transferred":[107],"one":[109],"store":[111],"another":[113],"HTTP":[116],"Databus.":[119],"this":[121],"paper":[122],"we":[123],"describe":[124],"our":[130,195],"Databus":[132],"using":[133],"Web":[134,191],"Services,":[135],"new":[140],"strategy":[141,196],"bioinformatics":[146],"sets.":[148,203],"We":[149],"first":[150],"manually":[151],"identify":[152],"semantically":[153],"attributes":[155],"in":[156],"both":[157],"then":[159],"automatically":[160],"join":[161],"corresponding":[163],"sets":[165],"single":[168],"integrated":[169],"collection":[170],"formatted":[173],"data.":[174],"Our":[175],"software":[176],"is":[177,197],"operational,":[178],"preliminary":[180],"performance":[181],"measurements":[182],"DTD":[184],"downloaded":[187],"NIH-NCBI":[190],"site":[192],"show":[193],"that":[194],"feasible":[198],"moderately":[200],"sized":[201]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
