{"id":"https://openalex.org/W2101475289","doi":"https://doi.org/10.1145/1143997.1144046","title":"The role of diverse populations in phylogenetic analysis","display_name":"The role of diverse populations in phylogenetic analysis","publication_year":2006,"publication_date":"2006-07-08","ids":{"openalex":"https://openalex.org/W2101475289","doi":"https://doi.org/10.1145/1143997.1144046","mag":"2101475289"},"language":"en","primary_location":{"id":"doi:10.1145/1143997.1144046","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1143997.1144046","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th annual conference on Genetic and evolutionary computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113709903","display_name":"Tiffani L. Williams","orcid":null},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tiffani L. Williams","raw_affiliation_strings":["Texas A&amp;M University, College Station, TX","Texas A&M University, College Station. TX#TAB#"],"affiliations":[{"raw_affiliation_string":"Texas A&amp;M University, College Station, TX","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Texas A&M University, College Station. TX#TAB#","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043448756","display_name":"Marc L. Smith","orcid":null},"institutions":[{"id":"https://openalex.org/I27504731","display_name":"Colby College","ror":"https://ror.org/00fvyjk73","country_code":"US","type":"education","lineage":["https://openalex.org/I27504731"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marc L. Smith","raw_affiliation_strings":["Colby College, Waterville, ME"],"affiliations":[{"raw_affiliation_string":"Colby College, Waterville, ME","institution_ids":["https://openalex.org/I27504731"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5113709903"],"corresponding_institution_ids":["https://openalex.org/I91045830"],"apc_list":null,"apc_paid":null,"fwci":0.1362,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.53109754,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"287","last_page":"294"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9715999960899353,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9682000279426575,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6507887244224548},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6449181437492371},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.6203839778900146},{"id":"https://openalex.org/keywords/tree-rearrangement","display_name":"Tree rearrangement","score":0.5881006717681885},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.5861383676528931},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5510514378547668},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.5377991199493408},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5178061723709106},{"id":"https://openalex.org/keywords/convergence","display_name":"Convergence (economics)","score":0.5118964910507202},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40220820903778076},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3402942419052124},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3090175986289978},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10853621363639832},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.07159560918807983}],"concepts":[{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6507887244224548},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6449181437492371},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.6203839778900146},{"id":"https://openalex.org/C53208351","wikidata":"https://www.wikidata.org/wiki/Q7837630","display_name":"Tree rearrangement","level":4,"score":0.5881006717681885},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.5861383676528931},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5510514378547668},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.5377991199493408},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5178061723709106},{"id":"https://openalex.org/C2777303404","wikidata":"https://www.wikidata.org/wiki/Q759757","display_name":"Convergence (economics)","level":2,"score":0.5118964910507202},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40220820903778076},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3402942419052124},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3090175986289978},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10853621363639832},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.07159560918807983},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/1143997.1144046","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1143997.1144046","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th annual conference on Genetic and evolutionary computation","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.420.5134","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.420.5134","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.york.ac.uk/rts/docs/GECCO_2006/docs/p287.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320311883","display_name":"Colby College","ror":"https://ror.org/00fvyjk73"},{"id":"https://openalex.org/F4320332388","display_name":"Radcliffe Institute for Advanced Study, Harvard University","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W18216792","https://openalex.org/W397102730","https://openalex.org/W590197378","https://openalex.org/W1581057686","https://openalex.org/W1606486549","https://openalex.org/W1993371508","https://openalex.org/W2011397439","https://openalex.org/W2019966118","https://openalex.org/W2036652021","https://openalex.org/W2041797002","https://openalex.org/W2048132103","https://openalex.org/W2070919193","https://openalex.org/W2083213362","https://openalex.org/W2106179083","https://openalex.org/W2106228995","https://openalex.org/W2116520841","https://openalex.org/W2122723956","https://openalex.org/W2126763909","https://openalex.org/W2148452773","https://openalex.org/W2161307885","https://openalex.org/W2164789250","https://openalex.org/W2577202510","https://openalex.org/W3217097258","https://openalex.org/W4254717640"],"related_works":["https://openalex.org/W85430217","https://openalex.org/W4205930990","https://openalex.org/W1993799876","https://openalex.org/W2917424786","https://openalex.org/W3088015816","https://openalex.org/W2607237371","https://openalex.org/W2362218761","https://openalex.org/W2113708670","https://openalex.org/W2158340599","https://openalex.org/W2062354928"],"abstract_inverted_index":{"The":[0,137],"most":[1],"popular":[2],"approaches":[3],"for":[4,23,58,86],"reconstructing":[5,24],"phylogenetic":[6],"trees":[7,26],"attempt":[8],"to":[9,38,71,107,169],"solve":[10],"NP-hard":[11],"optimization":[12],"criteria":[13,85],"such":[14],"as":[15],"maximum":[16],"parsimony":[17],"(MP).":[18],"Currently,":[19],"the":[20,66,130,143,156,171],"best-performing":[21],"heuristic":[22],"MP":[25,109],"is":[27,81,153],"Recursive-Iterative":[28],"DCM3":[29],"(Rec-I-DCM3),":[30],"which":[31,122],"uses":[32],"a":[33,55,60,88,160],"single":[34],"tree":[35,45,125],"(or":[36],"solution)":[37],"guide":[39],"its":[40],"way":[41],"through":[42],"an":[43,117],"exponentially-sized":[44],"space.":[46],"To":[47,111],"improve":[48],"performance":[49,67,173],"further,":[50],"we":[51,115],"designed":[52,116],"Cooperative":[53,69,82],"Rec-I-DCM3,":[54],"population-based":[56],"approach":[57],"utilizing":[59],"population":[61,89,119,161],"of":[62,68,90,102,105,129,162],"Rec-I-DCM3":[63,70,72,99],"trees.We":[64],"compare":[65],"on":[73],"four":[74],"large":[75],"biological":[76],"datasets.":[77],"Of":[78],"particular":[79],"interest":[80],"Rec-I-DCM3's":[83],"selection":[84],"maintaining":[87],"solutions.":[91],"Our":[92],"experiments":[93],"reveal":[94],"that":[95,128],"diverse":[96,163],"populations":[97],"outperform":[98],"in":[100,121,134,147],"terms":[101],"average":[103],"rates":[104],"convergence":[106],"best-known":[108],"scores.":[110],"achieve":[112,170],"greater":[113],"performance,":[114],"elitist":[118,138],"strategy,":[120],"each":[123,135],"solution's":[124],"score":[126,132],"matches":[127],"best":[131,157],"found":[133],"generation.":[136],"strategy":[139],"was":[140],"by":[141],"far":[142],"worst":[144],"overall":[145],"performer":[146],"our":[148,166],"experiments.":[149],"Hence,":[150],"being":[151],"greedy":[152],"not":[154],"always":[155],"approach.":[158],"Instead,":[159],"solutions":[164],"allows":[165],"cooperative":[167],"algorithm":[168],"greatest":[172],"improvements.":[174]},"counts_by_year":[],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
