{"id":"https://openalex.org/W2064492246","doi":"https://doi.org/10.1145/1141277.1141316","title":"An integrated computational proteomics method to extract protein targets for Fanconi Anemia studies","display_name":"An integrated computational proteomics method to extract protein targets for Fanconi Anemia studies","publication_year":2006,"publication_date":"2006-04-23","ids":{"openalex":"https://openalex.org/W2064492246","doi":"https://doi.org/10.1145/1141277.1141316","mag":"2064492246"},"language":"en","primary_location":{"id":"doi:10.1145/1141277.1141316","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1141277.1141316","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2006 ACM symposium on Applied computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058469124","display_name":"Jake Y. Chen","orcid":"https://orcid.org/0000-0001-8829-7504"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jake Yue Chen","raw_affiliation_strings":["Indiana University School of Informatics, Indianapolis, IN","Indiana University, School of Informatics, Indianapolis, IN#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University School of Informatics, Indianapolis, IN","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University, School of Informatics, Indianapolis, IN#TAB#","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000449982","display_name":"Sarah L. Pinkerton","orcid":null},"institutions":[{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sarah L. Pinkerton","raw_affiliation_strings":["Indiana University School of Medicine, Indianapolis, IN","Indiana University School of Medicine , Indianapolis , IN ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University School of Medicine, Indianapolis, IN","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"Indiana University School of Medicine , Indianapolis , IN ,","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063081757","display_name":"Changyu Shen","orcid":"https://orcid.org/0000-0002-4444-0943"},"institutions":[{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Changyu Shen","raw_affiliation_strings":["Indiana University School of Medicine, Indianapolis, IN","Indiana University School of Medicine , Indianapolis , IN ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University School of Medicine, Indianapolis, IN","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"Indiana University School of Medicine , Indianapolis , IN ,","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101730756","display_name":"Mu Wang","orcid":"https://orcid.org/0000-0002-5424-7645"},"institutions":[{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mu Wang","raw_affiliation_strings":["Indiana University School of Medicine, Indianapolis, IN","Indiana University School of Medicine , Indianapolis , IN ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University School of Medicine, Indianapolis, IN","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"Indiana University School of Medicine , Indianapolis , IN ,","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.6819,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.67934026,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"173","last_page":"179"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10123","display_name":"DNA Repair Mechanisms","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10123","display_name":"DNA Repair Mechanisms","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12441","display_name":"Porphyrin Metabolism and Disorders","score":0.9732999801635742,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9661999940872192,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fanca","display_name":"FANCA","score":0.9253497123718262},{"id":"https://openalex.org/keywords/fancd2","display_name":"FANCD2","score":0.8249981999397278},{"id":"https://openalex.org/keywords/fanconi-anemia","display_name":"Fanconi anemia","score":0.7619668245315552},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6147181391716003},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.5986250042915344},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4844503402709961},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44181859493255615},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.4165036678314209},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.35256046056747437},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.35231494903564453},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.29447346925735474}],"concepts":[{"id":"https://openalex.org/C2778993383","wikidata":"https://www.wikidata.org/wiki/Q17927056","display_name":"FANCA","level":5,"score":0.9253497123718262},{"id":"https://openalex.org/C2776653068","wikidata":"https://www.wikidata.org/wiki/Q17927069","display_name":"FANCD2","level":5,"score":0.8249981999397278},{"id":"https://openalex.org/C2778124228","wikidata":"https://www.wikidata.org/wiki/Q845779","display_name":"Fanconi anemia","level":4,"score":0.7619668245315552},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6147181391716003},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.5986250042915344},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4844503402709961},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44181859493255615},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.4165036678314209},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.35256046056747437},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.35231494903564453},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.29447346925735474},{"id":"https://openalex.org/C134935766","wikidata":"https://www.wikidata.org/wiki/Q210538","display_name":"DNA repair","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1141277.1141316","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1141277.1141316","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2006 ACM symposium on Applied computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309667","display_name":"Purdue Research Foundation","ror":"https://ror.org/007n03h88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W56784355","https://openalex.org/W1495571943","https://openalex.org/W1502708533","https://openalex.org/W1507694958","https://openalex.org/W1934523516","https://openalex.org/W1947648770","https://openalex.org/W1966519033","https://openalex.org/W1987676137","https://openalex.org/W2000438077","https://openalex.org/W2031746309","https://openalex.org/W2034133999","https://openalex.org/W2038936226","https://openalex.org/W2054111091","https://openalex.org/W2062584010","https://openalex.org/W2063389953","https://openalex.org/W2065417936","https://openalex.org/W2084259798","https://openalex.org/W2087505934","https://openalex.org/W2092113847","https://openalex.org/W2095919671","https://openalex.org/W2101161126","https://openalex.org/W2133442371","https://openalex.org/W2144014661","https://openalex.org/W2157052459","https://openalex.org/W2161854614","https://openalex.org/W2253940800","https://openalex.org/W2387074628","https://openalex.org/W2416666394","https://openalex.org/W2624938822","https://openalex.org/W2735046353","https://openalex.org/W4251388296","https://openalex.org/W4302183079","https://openalex.org/W6666174462"],"related_works":["https://openalex.org/W2153025234","https://openalex.org/W2107254805","https://openalex.org/W2053054375","https://openalex.org/W1653285373","https://openalex.org/W3216431082","https://openalex.org/W3040316671","https://openalex.org/W2035667749","https://openalex.org/W2040881136","https://openalex.org/W2157052459","https://openalex.org/W4241453313"],"abstract_inverted_index":{"Fanconi":[0],"Anemia":[1],"(FA)":[2],"is":[3,146],"a":[4,124,129,159,191],"rare":[5],"autosomal":[6],"genetic":[7],"disease":[8,207,221],"with":[9,110,149,224],"multiple":[10],"birth":[11],"defects":[12],"and":[13,154,178],"severe":[14],"childhood":[15],"complications":[16],"for":[17,62,70],"its":[18],"patients.":[19],"The":[20],"lack":[21],"of":[22,25,82,96,134,152,161,194,206],"sequence":[23],"homology":[24],"the":[26,119,162,165,173],"entire":[27],"FA":[28,196],"Complementation":[29],"Group":[30],"proteins":[31,85,122,136,170],"in":[32,137,172],"such":[33],"as":[34,86],"FANCC,":[35],"FANCG,":[36],"FANCA":[37],"makes":[38],"them":[39],"extremely":[40],"difficult":[41],"to":[42,54,58,127,189,219],"characterize":[43],"using":[44,64,123],"conventional":[45],"bioinformatics":[46],"methods.":[47],"In":[48],"this":[49,144],"work,":[50],"we":[51,117,176],"describe":[52],"how":[53],"use":[55],"computational":[56],"methods":[57,109],"extract":[59],"protein":[60,65,74,131,139,183],"targets":[61],"FA,":[63],"interaction":[66,132,181],"data":[67,104],"set":[68,81,95],"collected":[69],"FANC":[71],"group":[72],"C":[73],"(FANCC).":[75],"We":[76,141,156,212],"first":[77],"generated":[78],"an":[79,92,180],"initial":[80],"130":[83],"FA-interacting":[84],"\"FANCC":[87],"seed":[88,121],"proteins\"":[89],"by":[90],"merging":[91],"in-house":[93],"experimental":[94],"FANCC":[97,120,130],"Tandem":[98],"Affinity":[99],"Purification":[100],"(TAP)":[101],"Pulldown":[102],"Proteomics":[103],"identified":[105],"from":[106],"Mass":[107],"Spectrometry":[108],"publicly":[111],"available":[112],"human":[113],"FANCC-interacting":[114],"proteins.":[115,197],"Next,":[116],"expanded":[118],"nearest-neighbor":[125],"method":[126,215],"generate":[128],"subnetwork":[133],"948":[135],"903":[138],"interactions.":[140],"show":[142,158],"that":[143,167],"network":[145,182],"statistically":[147],"significant,":[148],"high":[150],"indices":[151],"aggregation":[153],"separations.":[155],"also":[157],"visualization":[160],"network,":[163],"support":[164],"evidence":[166],"many":[168],"well-connected":[169],"exists":[171],"network.":[174],"Further,":[175],"developed":[177],"applied":[179],"scoring":[184],"algorithm,":[185],"which":[186],"allows":[187],"us":[188],"calculate":[190],"ranked":[192],"list":[193],"significant":[195],"Our":[198],"result":[199],"has":[200],"been":[201],"supporting":[202],"further":[203],"biological":[204],"investigations":[205],"biologists":[208],"on":[209],"our":[210,214],"team.":[211],"believe":[213],"can":[216],"be":[217],"generalized":[218],"other":[220],"biology":[222],"studies":[223],"similar":[225],"problems.":[226]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
