{"id":"https://openalex.org/W2156918975","doi":"https://doi.org/10.1145/1135777.1135826","title":"Knowledge modeling and its application in life sciences","display_name":"Knowledge modeling and its application in life sciences","publication_year":2006,"publication_date":"2006-05-23","ids":{"openalex":"https://openalex.org/W2156918975","doi":"https://doi.org/10.1145/1135777.1135826","mag":"2156918975"},"language":"en","primary_location":{"id":"doi:10.1145/1135777.1135826","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1135777.1135826","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th international conference on World Wide Web","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050196876","display_name":"Satya S. Sahoo","orcid":"https://orcid.org/0000-0001-9190-4256"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Satya S. Sahoo","raw_affiliation_strings":["University of Georgia, Athens, GA"],"affiliations":[{"raw_affiliation_string":"University of Georgia, Athens, GA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030654559","display_name":"Christopher Thomas","orcid":"https://orcid.org/0000-0002-5898-9355"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher Thomas","raw_affiliation_strings":["University of Georgia, Athens, GA"],"affiliations":[{"raw_affiliation_string":"University of Georgia, Athens, GA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028772801","display_name":"Amit Sheth","orcid":null},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amit Sheth","raw_affiliation_strings":["University of Georgia, Athens, GA"],"affiliations":[{"raw_affiliation_string":"University of Georgia, Athens, GA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069319935","display_name":"William S. York","orcid":"https://orcid.org/0000-0003-0883-3237"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William S. York","raw_affiliation_strings":["University of Georgia, Athens, GA"],"affiliations":[{"raw_affiliation_string":"University of Georgia, Athens, GA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018678705","display_name":"Samir Tartir","orcid":null},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samir Tartir","raw_affiliation_strings":["University of Georgia, Athens, GA"],"affiliations":[{"raw_affiliation_string":"University of Georgia, Athens, GA","institution_ids":["https://openalex.org/I165733156"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5050196876"],"corresponding_institution_ids":["https://openalex.org/I165733156"],"apc_list":null,"apc_paid":null,"fwci":3.7089,"has_fulltext":false,"cited_by_count":43,"citation_normalized_percentile":{"value":0.93702469,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"317","last_page":"326"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7842403054237366},{"id":"https://openalex.org/keywords/glycoproteomics","display_name":"Glycoproteomics","score":0.7615407705307007},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6048619151115417},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5640072822570801},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.46658024191856384},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4413113594055176},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4127127528190613},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13811498880386353},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.12220808863639832}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7842403054237366},{"id":"https://openalex.org/C156534840","wikidata":"https://www.wikidata.org/wiki/Q5572649","display_name":"Glycoproteomics","level":4,"score":0.7615407705307007},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6048619151115417},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5640072822570801},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.46658024191856384},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4413113594055176},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4127127528190613},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13811498880386353},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.12220808863639832},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1135777.1135826","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1135777.1135826","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th international conference on World Wide Web","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","score":0.5299999713897705,"display_name":"Responsible consumption and production"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W41512686","https://openalex.org/W1534981661","https://openalex.org/W1547115835","https://openalex.org/W1603776115","https://openalex.org/W1654805921","https://openalex.org/W1937151504","https://openalex.org/W1981021538","https://openalex.org/W1983217234","https://openalex.org/W1990890881","https://openalex.org/W1994100378","https://openalex.org/W2004407704","https://openalex.org/W2031752570","https://openalex.org/W2043856222","https://openalex.org/W2054587253","https://openalex.org/W2063015833","https://openalex.org/W2075123415","https://openalex.org/W2079804839","https://openalex.org/W2097395913","https://openalex.org/W2099808592","https://openalex.org/W2100313866","https://openalex.org/W2103017472","https://openalex.org/W2159482845","https://openalex.org/W2160948978","https://openalex.org/W2163577472","https://openalex.org/W2164947858","https://openalex.org/W2166090503","https://openalex.org/W2171495639","https://openalex.org/W2314309884","https://openalex.org/W4232629739","https://openalex.org/W4240861547","https://openalex.org/W4254142315","https://openalex.org/W4294216483","https://openalex.org/W6601703463"],"related_works":["https://openalex.org/W2615718202","https://openalex.org/W3113659932","https://openalex.org/W2137660813","https://openalex.org/W2408786364","https://openalex.org/W3027752077","https://openalex.org/W4311396597","https://openalex.org/W2084058293","https://openalex.org/W2416184993","https://openalex.org/W4210274625","https://openalex.org/W4320489157"],"abstract_inverted_index":{"High":[0],"throughput":[1,169],"glycoproteomics,":[2],"similar":[3],"to":[4,32,93,101,130,191],"genomics":[5],"and":[6,21,37,79,148,212],"proteomics,":[7],"involves":[8],"extremely":[9,137],"large":[10,96,138],"volumes":[11],"of":[12,23,28,49,72,77,84,98,111,127,144,152,160,184,194,197,206],"distributed,":[13],"heterogeneous":[14],"data":[15,78,100],"as":[16,142,180],"a":[17,24,58,66,70,181,195],"basis":[18],"for":[19,36,60,167,210],"identification":[20],"quantification":[22],"structurally":[25],"diverse":[26],"collection":[27],"biomolecules.":[29],"The":[30,158],"ability":[31],"share,":[33],"compare,":[34],"query":[35],"most":[38],"critically":[39],"correlate":[40],"datasets":[41,139],"using":[42,69,154],"the":[43,50,85,95,109,125,145,150,204],"native":[44],"biological":[45,113,122,214],"relationships":[46,120],"are":[47,64,201],"some":[48],"challenges":[51],"being":[52],"faced":[53],"by":[54],"glycobiology":[55],"researchers.":[56],"As":[57],"solution":[59],"these":[61,112,132,161],"challenges,":[62],"we":[63,106],"building":[65,211],"semantic":[67],"structure,":[68],"suite":[71],"ontologies,":[73],"which":[74,200],"supports":[75],"management":[76],"information":[80],"at":[81],"each":[82],"step":[83],"experimental":[86,171],"lifecycle.":[87],"This":[88],"framework":[89,209],"will":[90],"enable":[91],"researchers":[92],"leverage":[94],"scale":[97],"glycoproteomics":[99,170],"their":[102],"benefit.In":[103],"this":[104],"paper,":[105],"focus":[107],"on":[108,119,124,149],"design":[110],"ontology":[114],"schemas":[115],"with":[116],"an":[117,207],"emphasis":[118],"between":[121],"concepts,":[123],"use":[126,182,198],"novel":[128],"approaches":[129],"populate":[131],"complex":[133],"ontologies":[134,153,162,187],"including":[135],"integrating":[136],"(":[140],"500MB)":[141],"part":[143,193],"instance":[146],"base":[147],"evaluation":[151],"OntoQA":[155],"[38]":[156],"metrics.":[157],"application":[159],"in":[163,188,203],"providing":[164],"informatics":[165],"solutions,":[166],"high":[168],"domain,":[172,190],"is":[173],"also":[174],"discussed.":[175],"We":[176],"present":[177],"our":[178],"experience":[179],"case":[183],"developing":[185],"two":[186],"one":[189],"be":[192],"set":[196],"cases,":[199],"used":[202],"development":[205],"emergent":[208],"deploying":[213],"ontologies.":[215]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
