{"id":"https://openalex.org/W2006439165","doi":"https://doi.org/10.1145/1134030.1134044","title":"Boosting performance of bio-entity recognition by combining results from multiple systems","display_name":"Boosting performance of bio-entity recognition by combining results from multiple systems","publication_year":2005,"publication_date":"2005-08-21","ids":{"openalex":"https://openalex.org/W2006439165","doi":"https://doi.org/10.1145/1134030.1134044","mag":"2006439165"},"language":"en","primary_location":{"id":"doi:10.1145/1134030.1134044","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1134030.1134044","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th international workshop on Bioinformatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101718341","display_name":"Luo Si","orcid":"https://orcid.org/0000-0002-3263-234X"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luo Si","raw_affiliation_strings":["Carnegie Mellon University, Pittsburgh, PA","Carnegie-Mellon University, Pittsburgh, PA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carnegie Mellon University, Pittsburgh, PA","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Carnegie-Mellon University, Pittsburgh, PA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052200294","display_name":"Tapas Kanungo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210085935","display_name":"IBM Research - Almaden","ror":"https://ror.org/005w8dd04","country_code":"US","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210085935","https://openalex.org/I4210114115"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tapas Kanungo","raw_affiliation_strings":["IBM Almaden Research Center, San Jose, CA","IBM Almaden Research Center San Jose , CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Almaden Research Center, San Jose, CA","institution_ids":["https://openalex.org/I4210085935"]},{"raw_affiliation_string":"IBM Almaden Research Center San Jose , CA","institution_ids":["https://openalex.org/I4210085935"]}]},{"author_position":"last","author":{"id":null,"display_name":"Xiangji Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I192455969","display_name":"York University","ror":"https://ror.org/05fq50484","country_code":"CA","type":"education","lineage":["https://openalex.org/I192455969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Xiangji Huang","raw_affiliation_strings":["York University Toronto, Canada","York University, Toronto,Canada#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"York University Toronto, Canada","institution_ids":["https://openalex.org/I192455969"]},{"raw_affiliation_string":"York University, Toronto,Canada#TAB#","institution_ids":["https://openalex.org/I192455969"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.9189,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":{"value":0.80670325,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"76","last_page":"83"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.9043904542922974},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8296386003494263},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.8108581304550171},{"id":"https://openalex.org/keywords/boosting","display_name":"Boosting (machine learning)","score":0.6596376895904541},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6349698305130005},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.566176176071167},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.539116382598877},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5326437950134277},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.4431951344013214},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4218406677246094},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4051862359046936},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.35669171810150146},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0684199333190918}],"concepts":[{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.9043904542922974},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8296386003494263},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.8108581304550171},{"id":"https://openalex.org/C46686674","wikidata":"https://www.wikidata.org/wiki/Q466303","display_name":"Boosting (machine learning)","level":2,"score":0.6596376895904541},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6349698305130005},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.566176176071167},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.539116382598877},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5326437950134277},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.4431951344013214},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4218406677246094},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4051862359046936},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.35669171810150146},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0684199333190918},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/1134030.1134044","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1134030.1134044","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th international workshop on Bioinformatics","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.65.53","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.65.53","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.kanungo.us/pubs/bioKDD05.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W109259059","https://openalex.org/W1520377376","https://openalex.org/W1934019294","https://openalex.org/W1988686126","https://openalex.org/W1993564464","https://openalex.org/W2004111828","https://openalex.org/W2004163047","https://openalex.org/W2008639146","https://openalex.org/W2015076781","https://openalex.org/W2021331223","https://openalex.org/W2047782770","https://openalex.org/W2072167633","https://openalex.org/W2114361266","https://openalex.org/W2125838338","https://openalex.org/W2127031049","https://openalex.org/W2139212933","https://openalex.org/W2141099517","https://openalex.org/W2144578941","https://openalex.org/W2147880316","https://openalex.org/W2156515921","https://openalex.org/W2163107094","https://openalex.org/W3193477162","https://openalex.org/W4240579122","https://openalex.org/W4285719527","https://openalex.org/W6679040077"],"related_works":["https://openalex.org/W4250494529","https://openalex.org/W1964783010","https://openalex.org/W2399696375","https://openalex.org/W45206245","https://openalex.org/W2211396092","https://openalex.org/W2078793151","https://openalex.org/W2061834489","https://openalex.org/W2751906762","https://openalex.org/W3088215229","https://openalex.org/W3047727388"],"abstract_inverted_index":{"The":[0,69,126],"task":[1,39],"of":[2,14,18,44,84,97,122],"biomedical":[3,33,59,114,145],"named-entity":[4,34,60,67,115],"recognition":[5,35,61,87,116,120,124,173],"is":[6,48,77,160],"to":[7,21,80,94,167],"identify":[8],"technical":[9],"terms":[10],"in":[11,74],"the":[12,55,98,143,151,163],"domain":[13,22,91,104],"biology":[15],"that":[16,118,150],"are":[17],"special":[19],"interest":[20],"experts.":[23],"While":[24],"numerous":[25],"algorithms":[26,57,117,128],"have":[27],"been":[28],"proposed":[29,127],"for":[30,58,64,71],"this":[31],"task,":[32],"remains":[36],"a":[37,50],"challenging":[38],"and":[40,62,89,102,135],"an":[41],"active":[42],"area":[43],"research,":[45],"as":[46],"there":[47],"still":[49],"large":[51],"accuracy":[52,75],"gap":[53],"between":[54],"best":[56,164],"those":[63],"general":[65],"newswire":[66],"recognition.":[68],"reason":[70],"such":[72],"discrepancy":[73],"results":[76,121,148],"generally":[78],"attributed":[79],"inadequate":[81],"feature":[82,100],"representations":[83,101],"individual":[85,165],"entity":[86,172],"systems":[88],"external":[90,103],"knowledge.In":[92],"order":[93],"take":[95],"advantage":[96],"rich":[99],"knowledge":[105],"used":[106],"by":[107,162,169],"different":[108],"systems,":[109],"we":[110],"propose":[111],"several":[112],"Meta":[113,171],"combine":[119],"various":[123],"systems.":[125],"--":[129,139],"majority":[130],"vote,":[131],"unstructured":[132],"exponential":[133],"model":[134],"conditional":[136],"random":[137],"field":[138],"were":[140],"tested":[141],"on":[142],"GENIA":[144],"corpus.":[146],"Empirical":[147],"show":[149],"F":[152],"score":[153],"can":[154],"be":[155],"improved":[156],"from":[157],"0.72,":[158],"which":[159],"attained":[161],"system,":[166],"0.96":[168],"our":[170],"approach.":[174]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
