{"id":"https://openalex.org/W2052652433","doi":"https://doi.org/10.1145/1134030.1134042","title":"Analysis of protein-protein interaction networks using random walks","display_name":"Analysis of protein-protein interaction networks using random walks","publication_year":2005,"publication_date":"2005-08-21","ids":{"openalex":"https://openalex.org/W2052652433","doi":"https://doi.org/10.1145/1134030.1134042","mag":"2052652433"},"language":"en","primary_location":{"id":"doi:10.1145/1134030.1134042","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1134030.1134042","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th international workshop on Bioinformatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045764563","display_name":"Tolga Can","orcid":"https://orcid.org/0000-0002-5532-0154"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tolga Can","raw_affiliation_strings":["University of California, Santa Barbara, CA","University of California, Santa Barbara, Ca#TAB#"],"affiliations":[{"raw_affiliation_string":"University of California, Santa Barbara, CA","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"University of California, Santa Barbara, Ca#TAB#","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056984579","display_name":"Orhan \u00c7amo\u01e7lu","orcid":null},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Orhan \u00c7amo\u01e7lu","raw_affiliation_strings":["University of California, Santa Barbara, CA","University of California, Santa Barbara, Ca#TAB#"],"affiliations":[{"raw_affiliation_string":"University of California, Santa Barbara, CA","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"University of California, Santa Barbara, Ca#TAB#","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036639779","display_name":"Ambuj K. Singh","orcid":"https://orcid.org/0000-0002-1997-7140"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ambuj K. Singh","raw_affiliation_strings":["University of California, Santa Barbara, CA","University of California, Santa Barbara, Ca#TAB#"],"affiliations":[{"raw_affiliation_string":"University of California, Santa Barbara, CA","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"University of California, Santa Barbara, Ca#TAB#","institution_ids":["https://openalex.org/I154570441"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5045764563"],"corresponding_institution_ids":["https://openalex.org/I154570441"],"apc_list":null,"apc_paid":null,"fwci":0.6329,"has_fulltext":false,"cited_by_count":74,"citation_normalized_percentile":{"value":0.6631327,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"61","last_page":"68"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9825000166893005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7700462341308594},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6910184621810913},{"id":"https://openalex.org/keywords/random-walk","display_name":"Random walk","score":0.6160580515861511},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5881376266479492},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5346566438674927},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.46563616394996643},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.45013466477394104},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4368756413459778},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.4284255802631378},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33092206716537476},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.32976263761520386},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3217223882675171},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0906103253364563}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7700462341308594},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6910184621810913},{"id":"https://openalex.org/C121194460","wikidata":"https://www.wikidata.org/wiki/Q856741","display_name":"Random walk","level":2,"score":0.6160580515861511},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5881376266479492},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5346566438674927},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.46563616394996643},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.45013466477394104},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4368756413459778},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.4284255802631378},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33092206716537476},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.32976263761520386},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3217223882675171},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0906103253364563},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/1134030.1134042","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1134030.1134042","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th international workshop on Bioinformatics","raw_type":"proceedings-article"},{"id":"pmh:oai:open.metu.edu.tr:11511/38846","is_oa":false,"landing_page_url":"https://hdl.handle.net/11511/38846","pdf_url":null,"source":{"id":"https://openalex.org/S4306402495","display_name":"OpenMETU (Middle East Technical University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I201799495","host_organization_name":"Middle East Technical University","host_organization_lineage":["https://openalex.org/I201799495"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1514107797","https://openalex.org/W1542652324","https://openalex.org/W2013502943","https://openalex.org/W2037036397","https://openalex.org/W2046618236","https://openalex.org/W2065304353","https://openalex.org/W2066636486","https://openalex.org/W2079007492","https://openalex.org/W2084619201","https://openalex.org/W2113654464","https://openalex.org/W2115826669","https://openalex.org/W2123012927","https://openalex.org/W2123500593","https://openalex.org/W2124354935","https://openalex.org/W2126991359","https://openalex.org/W2128817214","https://openalex.org/W2131456688","https://openalex.org/W2133075481","https://openalex.org/W2136850043","https://openalex.org/W2140000393","https://openalex.org/W2149310258","https://openalex.org/W2161948155","https://openalex.org/W2167869241","https://openalex.org/W2168702870"],"related_works":["https://openalex.org/W2094822546","https://openalex.org/W1969080446","https://openalex.org/W4388708026","https://openalex.org/W3108941781","https://openalex.org/W2134206588","https://openalex.org/W2084200259","https://openalex.org/W2065993463","https://openalex.org/W2401071219","https://openalex.org/W2554237979","https://openalex.org/W3199143553"],"abstract_inverted_index":{"Genome":[0],"wide":[1],"protein":[2,17,48],"networks":[3,60,96],"have":[4,54],"become":[5],"reality":[6],"in":[7,130],"recent":[8],"years":[9],"due":[10],"to":[11,39,44,57,124,171],"high":[12],"throughput":[13],"methods":[14],"for":[15,61,81,147],"detecting":[16],"interactions.":[18],"Recent":[19],"studies":[20],"show":[21,153],"that":[22,154],"a":[23,29,98],"networked":[24],"representation":[25],"of":[26,33,47,68,101,132,143],"proteins":[27],"provides":[28],"more":[30,165],"accurate":[31],"model":[32],"biological":[34],"systems":[35],"and":[36,66,110,134],"processes":[37],"compared":[38,170],"conventional":[40],"pair-wise":[41],"analyses.":[42],"Complementary":[43],"the":[45,82,88,105,114,121,140,148,155,172],"availability":[46],"networks,":[49],"various":[50],"graph":[51],"analysis":[52,145],"techniques":[53,128,146],"been":[55],"proposed":[56,89,122],"mine":[58],"these":[59],"pathway":[62,116],"discovery,":[63],"function":[64],"assignment,":[65],"prediction":[67],"complex":[69,107],"membership.":[70],"In":[71],"this":[72],"paper,":[73],"we":[74,119],"propose":[75],"using":[76,97],"random":[77,156],"walks":[78],"on":[79,91],"graphs":[80],"complex/pathway":[83],"membership":[84],"problem.":[85],"We":[86],"evaluate":[87],"technique":[90,123,158],"three":[92],"different":[93],"probabilistic":[94],"yeast":[95],"benchmark":[99],"dataset":[100],"27":[102],"complexes":[103],"from":[104,113],"MIPS":[106],"catalog":[108],"database":[109],"10":[111],"pathways":[112],"KEGG":[115],"database.":[117],"Furthermore,":[118],"compare":[120],"two":[125],"other":[126],"existing":[127],"both":[129],"terms":[131],"accuracy":[133,163],"running":[135],"time":[136],"performance,":[137],"thus":[138],"addressing":[139],"scalability":[141],"issue":[142],"such":[144],"first":[149],"time.":[150],"Our":[151],"experiments":[152],"walk":[157],"achieves":[159],"similar":[160],"or":[161],"better":[162],"with":[164],"than":[166],"1,000":[167],"times":[168],"speed-up":[169],"best":[173],"competing":[174],"technique.":[175]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-06T07:47:59.780226","created_date":"2025-10-10T00:00:00"}
