{"id":"https://openalex.org/W1965430039","doi":"https://doi.org/10.1145/1131348.1131353","title":"Two-phase learning for biological event extraction and verification","display_name":"Two-phase learning for biological event extraction and verification","publication_year":2006,"publication_date":"2006-03-01","ids":{"openalex":"https://openalex.org/W1965430039","doi":"https://doi.org/10.1145/1131348.1131353","mag":"1965430039"},"language":"en","primary_location":{"id":"doi:10.1145/1131348.1131353","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1131348.1131353","pdf_url":null,"source":{"id":"https://openalex.org/S56575750","display_name":"ACM Transactions on Asian Language Information Processing","issn_l":"1530-0226","issn":["1530-0226","1558-3430"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Transactions on Asian Language Information Processing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100746572","display_name":"Eunju Kim","orcid":"https://orcid.org/0000-0003-4040-0474"},"institutions":[{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Eunju Kim","raw_affiliation_strings":["Pohang University of Science and Technology, Pohang, Korea","Pohang University of Science and Technology , Pohang, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pohang University of Science and Technology, Pohang, Korea","institution_ids":["https://openalex.org/I123900574"]},{"raw_affiliation_string":"Pohang University of Science and Technology , Pohang, Korea","institution_ids":["https://openalex.org/I123900574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101453734","display_name":"Yu Song","orcid":"https://orcid.org/0000-0001-8727-1097"},"institutions":[{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Yu Song","raw_affiliation_strings":["Pohang University of Science and Technology, Pohang, Korea","Pohang University of Science and Technology , Pohang, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pohang University of Science and Technology, Pohang, Korea","institution_ids":["https://openalex.org/I123900574"]},{"raw_affiliation_string":"Pohang University of Science and Technology , Pohang, Korea","institution_ids":["https://openalex.org/I123900574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085000816","display_name":"Cheongjae Lee","orcid":"https://orcid.org/0009-0004-5176-8690"},"institutions":[{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Cheongjae Lee","raw_affiliation_strings":["Pohang University of Science and Technology, Pohang, Korea","Pohang University of Science and Technology , Pohang, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pohang University of Science and Technology, Pohang, Korea","institution_ids":["https://openalex.org/I123900574"]},{"raw_affiliation_string":"Pohang University of Science and Technology , Pohang, Korea","institution_ids":["https://openalex.org/I123900574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032102989","display_name":"Kyoungduk Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kyoungduk Kim","raw_affiliation_strings":["Pohang University of Science and Technology, Pohang, Korea","Pohang University of Science and Technology , Pohang, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pohang University of Science and Technology, Pohang, Korea","institution_ids":["https://openalex.org/I123900574"]},{"raw_affiliation_string":"Pohang University of Science and Technology , Pohang, Korea","institution_ids":["https://openalex.org/I123900574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045508648","display_name":"Gary Geunbae Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Gary Geunbae Lee","raw_affiliation_strings":["Pohang University of Science and Technology, Pohang, Korea","Pohang University of Science and Technology , Pohang, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pohang University of Science and Technology, Pohang, Korea","institution_ids":["https://openalex.org/I123900574"]},{"raw_affiliation_string":"Pohang University of Science and Technology , Pohang, Korea","institution_ids":["https://openalex.org/I123900574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030042887","display_name":"Byoung-Kee Yi","orcid":"https://orcid.org/0000-0002-7699-9629"},"institutions":[{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Byoung-Kee Yi","raw_affiliation_strings":["Pohang University of Science and Technology, Pohang, Korea","Pohang University of Science and Technology , Pohang, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pohang University of Science and Technology, Pohang, Korea","institution_ids":["https://openalex.org/I123900574"]},{"raw_affiliation_string":"Pohang University of Science and Technology , Pohang, Korea","institution_ids":["https://openalex.org/I123900574"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109869190","display_name":"Jeong-Won Cha","orcid":null},"institutions":[{"id":"https://openalex.org/I174101054","display_name":"Changwon National University","ror":"https://ror.org/04ts4qa58","country_code":"KR","type":"education","lineage":["https://openalex.org/I174101054"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jeongwon Cha","raw_affiliation_strings":["Changwon University, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Changwon University, Korea","institution_ids":["https://openalex.org/I174101054"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.8596,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.83450425,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"5","issue":"1","first_page":"61","last_page":"73"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12016","display_name":"Web Data Mining and Analysis","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12016","display_name":"Web Data Mining and Analysis","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8287863731384277},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7521569728851318},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.6914904117584229},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6762256026268005},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.6658287048339844},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5209302306175232},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.506726086139679},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.415071576833725},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3280867338180542}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8287863731384277},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7521569728851318},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.6914904117584229},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6762256026268005},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.6658287048339844},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5209302306175232},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.506726086139679},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.415071576833725},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3280867338180542},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1131348.1131353","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1131348.1131353","pdf_url":null,"source":{"id":"https://openalex.org/S56575750","display_name":"ACM Transactions on Asian Language Information Processing","issn_l":"1530-0226","issn":["1530-0226","1558-3430"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Transactions on Asian Language Information Processing","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W199541590","https://openalex.org/W1529481723","https://openalex.org/W1790194223","https://openalex.org/W1980860611","https://openalex.org/W1983453172","https://openalex.org/W1996903695","https://openalex.org/W1999117234","https://openalex.org/W2004620268","https://openalex.org/W2093618552","https://openalex.org/W2116632765","https://openalex.org/W2152698860","https://openalex.org/W2160238006","https://openalex.org/W2162340487","https://openalex.org/W2166474856","https://openalex.org/W2723068199","https://openalex.org/W6608044769"],"related_works":["https://openalex.org/W3107474891","https://openalex.org/W1991466308","https://openalex.org/W1871067837","https://openalex.org/W1527340856","https://openalex.org/W3049603541","https://openalex.org/W1522545030","https://openalex.org/W2120294916","https://openalex.org/W4313444831","https://openalex.org/W2153590513","https://openalex.org/W2520500684"],"abstract_inverted_index":{"Many":[0],"previous":[1,139],"biological":[2,17,78,90,128,145,218,228,242,315],"event-extraction":[3],"systems":[4,33,118,140],"were":[5,11,40],"based":[6],"on":[7,211],"hand-crafted":[8],"rules":[9,26,46,168],"which":[10],"specifically":[12],"tuned":[13],"to":[14,42,67,160,171,272],"a":[15,65,74,93,99,111,121,156,173,221,251,277,286,295,298,302,306],"specific":[16],"application":[18],"domain.":[19],"But":[20],"manually":[21],"constructing":[22],"and":[23,30,54,61,95,141,185,270,301],"tuning":[24],"the":[25,32,44,50,77,107,136,142,149,162,180,205,208,227,235,238,246,260,267,280],"are":[27,114],"time-consuming":[28],"processes":[29],"make":[31,71],"less":[34],"portable.":[35],"So":[36],"supervised":[37,132,157,222,287],"machine-learning":[38,158,223,288],"methods":[39],"developed":[41],"generate":[43],"extraction":[45,167],"automatically,":[47],"but":[48],"accepting":[49],"trade-off":[51,182],"between":[52,183,217],"precision":[53,184,275],"recall":[55,57,186,213,265],"(high":[56],"with":[58,230,250,276],"low":[59],"precision,":[60],"vice":[62],"versa)":[63],"is":[64,80],"barrier":[66],"improving":[68,212],"performance.":[69],"To":[70],"matters":[72],"worse,":[73],"text":[75],"in":[76,92,98,124,127,165,169,198,201,214,234,266,279,297],"domain":[79],"more":[81,87],"complex":[82],"because":[83],"it":[84,292],"often":[85],"contains":[86],"than":[88],"two":[89,199,309],"events":[91,126,216,229,243],"sentence,":[94],"one":[96],"event":[97,190,248],"noun":[100,299],"chunk":[101,300],"can":[102],"be":[103],"an":[104,189],"entity":[105],"for":[106,263,313],"other":[108,258],"event.":[109],"As":[110],"result,":[112],"there":[113],"as":[115],"yet":[116],"no":[117],"that":[119,291],"give":[120],"good":[122],"performance":[123],"extracting":[125,215,226],"domains":[129],"by":[130,187,244],"using":[131,188],"machine":[133,195],"learning.To":[134],"overcome":[135],"limitations":[137],"of":[138,144],"complexity":[143],"texts,":[146],"we":[147,154,178,284],"present":[148],"following":[150],"new":[151],"ideas.":[152],"First,":[153],"adopted":[155],"method":[159],"reduce":[161],"human":[163],"effort":[164],"making":[166],"order":[170],"obtain":[172],"highly":[174],"domain-portable":[175],"system.":[176],"Second,":[177],"overcame":[179],"classical":[181],"component":[191],"verification":[192],"method.":[193,256],"Thus,":[194],"learning":[196],"occurs":[197],"phases":[200],"our":[202],"architecture.":[203],"In":[204,257],"first":[206,268],"phase,":[207],"system":[209,239,261],"focuses":[210],"entities":[219],"during":[220],"period.":[224],"After":[225],"automatically":[231],"learned":[232],"rules,":[233],"second":[236,281],"phase":[237,269],"removes":[240],"incorrect":[241],"verifying":[245],"extracted":[247],"components":[249],"maximum":[252],"entropy":[253],"(ME)":[254],"classification":[255],"words,":[259],"targets":[262],"high":[264,274],"tries":[271],"achieve":[273],"classifier":[278],"phase.":[282],"Finally,":[283],"improved":[285],"algorithm":[289],"so":[290],"could":[293],"learn":[294],"rule":[296,303],"extending":[304],"throughout":[305],"sentence":[307],"at":[308],"different":[310],"levels,":[311],"separately,":[312],"nested":[314],"events.":[316]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
