{"id":"https://openalex.org/W2037166767","doi":"https://doi.org/10.1145/1102256.1102318","title":"There's more to a model than code","display_name":"There's more to a model than code","publication_year":2005,"publication_date":"2005-06-25","ids":{"openalex":"https://openalex.org/W2037166767","doi":"https://doi.org/10.1145/1102256.1102318","mag":"2037166767"},"language":"en","primary_location":{"id":"doi:10.1145/1102256.1102318","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1102256.1102318","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th annual workshop on Genetic and evolutionary computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013458161","display_name":"Janet Wiles","orcid":"https://orcid.org/0000-0002-4051-4116"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Janet Wiles","raw_affiliation_strings":["The University of Queensland","The University Of Queensland;"],"affiliations":[{"raw_affiliation_string":"The University of Queensland","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"The University Of Queensland;","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061048717","display_name":"Nicholas Geard","orcid":"https://orcid.org/0000-0003-0069-2281"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Nic Geard","raw_affiliation_strings":["The University of Queensland","The University Of Queensland;"],"affiliations":[{"raw_affiliation_string":"The University of Queensland","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"The University Of Queensland;","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067726453","display_name":"James R. Watson","orcid":"https://orcid.org/0000-0001-8296-9015"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"James Watson","raw_affiliation_strings":["The University of Queensland","The University Of Queensland;"],"affiliations":[{"raw_affiliation_string":"The University of Queensland","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"The University Of Queensland;","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012149059","display_name":"Kai Willadsen","orcid":null},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Kai Willadsen","raw_affiliation_strings":["The University of Queensland","The University Of Queensland;"],"affiliations":[{"raw_affiliation_string":"The University of Queensland","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"The University Of Queensland;","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023828670","display_name":"John S. Mattick","orcid":"https://orcid.org/0000-0002-7680-7527"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"John Mattick","raw_affiliation_strings":["The University of Queensland","The University Of Queensland;"],"affiliations":[{"raw_affiliation_string":"The University of Queensland","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"The University Of Queensland;","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074818494","display_name":"Daniel Bradley","orcid":"https://orcid.org/0000-0002-0091-7578"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Daniel Bradley","raw_affiliation_strings":["The University of Queensland","The University Of Queensland;"],"affiliations":[{"raw_affiliation_string":"The University of Queensland","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"The University Of Queensland;","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040063046","display_name":"Jennifer Hallinan","orcid":"https://orcid.org/0000-0002-2860-1022"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jennifer Hallinan","raw_affiliation_strings":["The University of Queensland","The University Of Queensland;"],"affiliations":[{"raw_affiliation_string":"The University of Queensland","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"The University Of Queensland;","institution_ids":["https://openalex.org/I165143802"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5013458161"],"corresponding_institution_ids":["https://openalex.org/I165143802"],"apc_list":null,"apc_paid":null,"fwci":0.1231,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.48460421,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"281","last_page":"288"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7543055415153503},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.5552496314048767},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5362640619277954},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.49025848507881165},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4589155614376068},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.43859100341796875},{"id":"https://openalex.org/keywords/modeling-language","display_name":"Modeling language","score":0.4143516719341278},{"id":"https://openalex.org/keywords/process-modeling","display_name":"Process modeling","score":0.41048234701156616},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.39717304706573486},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.359630286693573},{"id":"https://openalex.org/keywords/work-in-process","display_name":"Work in process","score":0.21697908639907837},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1935836672782898},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1464943289756775}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7543055415153503},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.5552496314048767},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5362640619277954},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.49025848507881165},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4589155614376068},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.43859100341796875},{"id":"https://openalex.org/C179603123","wikidata":"https://www.wikidata.org/wiki/Q1941921","display_name":"Modeling language","level":3,"score":0.4143516719341278},{"id":"https://openalex.org/C76956256","wikidata":"https://www.wikidata.org/wiki/Q27610560","display_name":"Process modeling","level":3,"score":0.41048234701156616},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.39717304706573486},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.359630286693573},{"id":"https://openalex.org/C174998907","wikidata":"https://www.wikidata.org/wiki/Q357662","display_name":"Work in process","level":2,"score":0.21697908639907837},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1935836672782898},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1464943289756775},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1102256.1102318","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1102256.1102318","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th annual workshop on Genetic and evolutionary computation","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W633741630","https://openalex.org/W1483436251","https://openalex.org/W1483935624","https://openalex.org/W1520175697","https://openalex.org/W1549012052","https://openalex.org/W1557023445","https://openalex.org/W1562393358","https://openalex.org/W1572664679","https://openalex.org/W1576776505","https://openalex.org/W1649645444","https://openalex.org/W1660272337","https://openalex.org/W1775845324","https://openalex.org/W1975998971","https://openalex.org/W1989952069","https://openalex.org/W2003494253","https://openalex.org/W2013089038","https://openalex.org/W2027920505","https://openalex.org/W2034536549","https://openalex.org/W2038074062","https://openalex.org/W2065769502","https://openalex.org/W2072691230","https://openalex.org/W2098672428","https://openalex.org/W2100297367","https://openalex.org/W2103017472","https://openalex.org/W2108020239","https://openalex.org/W2125315567","https://openalex.org/W2142398281","https://openalex.org/W2142794306","https://openalex.org/W2145677203","https://openalex.org/W2596535872","https://openalex.org/W2726772824","https://openalex.org/W2953047277","https://openalex.org/W3103071483","https://openalex.org/W3124098789","https://openalex.org/W4242450223","https://openalex.org/W4285719527","https://openalex.org/W4388252848","https://openalex.org/W6633620459"],"related_works":["https://openalex.org/W2252092255","https://openalex.org/W2575875398","https://openalex.org/W1759095019","https://openalex.org/W2143986775","https://openalex.org/W2387935369","https://openalex.org/W2134060725","https://openalex.org/W3089912651","https://openalex.org/W103024079","https://openalex.org/W2663293405","https://openalex.org/W2232298474"],"abstract_inverted_index":{"Mapping":[0],"biology":[1],"into":[2],"computation":[3],"has":[4],"both":[5],"a":[6,15],"domain":[7],"specific":[8],"aspect":[9,17],"--":[10,13,18],"biological":[11,43,79],"theory":[12],"and":[14,45,65,86,100],"methodological":[16],"model":[19],"development.":[20],"Computational":[21],"modelers":[22],"have":[23],"implicit":[24],"knowledge":[25,34],"that":[26,74,104],"guides":[27],"modeling":[28,49,63,76,98],"in":[29,48,61,116],"many":[30],"ways":[31],"but":[32],"this":[33],"is":[35,108],"rarely":[36],"communicated.":[37],"We":[38,102],"review":[39],"the":[40,54,60,75,90],"challenge":[41],"of":[42,56,59,77,92],"complexity":[44],"current":[46],"practices":[47],"genetic":[50],"regulatory":[51],"networks":[52],"with":[53],"aim":[55],"understanding":[57],"characteristics":[58],"silico":[62],"process":[64],"proposing":[66],"directions":[67],"for":[68,125],"future":[69],"improvements.":[70],"Specifically,":[71],"we":[72],"contend":[73],"complex":[78],"systems":[80],"can":[81],"be":[82],"made":[83],"more":[84,87],"efficient":[85],"effective":[88],"by":[89],"use":[91],"structured":[93],"methodologies":[94],"incorporating":[95],"experience":[96],"about":[97],"algorithms":[99],"implementation.":[101],"suggest":[103],"an":[105],"appropriate":[106],"formalism":[107],"Complex":[109],"Systems":[110],"Patterns,":[111],"adopted":[112],"from":[113],"Design":[114],"Patterns":[115],"software":[117],"engineering.":[118],"First":[119],"steps":[120],"towards":[121],"building":[122],"community":[123],"resources":[124],"such":[126],"patterns":[127],"are":[128],"described.":[129]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
