{"id":"https://openalex.org/W2028581602","doi":"https://doi.org/10.1145/1101389.1101418","title":"Visual data mining of genomic databases by immersive graph-based exploration","display_name":"Visual data mining of genomic databases by immersive graph-based exploration","publication_year":2005,"publication_date":"2005-11-29","ids":{"openalex":"https://openalex.org/W2028581602","doi":"https://doi.org/10.1145/1101389.1101418","mag":"2028581602"},"language":"en","primary_location":{"id":"doi:10.1145/1101389.1101418","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1101389.1101418","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 3rd international conference on Computer graphics and interactive techniques in Australasia and South East Asia","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/0705.1535","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062588006","display_name":"Nicolas F\u00e9rey","orcid":"https://orcid.org/0000-0002-7713-001X"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"N. F\u00e9rey","raw_affiliation_strings":["Universit\u00e9 Paris SUD XI, Orsay (France)"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris SUD XI, Orsay (France)","institution_ids":["https://openalex.org/I102197404"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112488803","display_name":"Pierre-Emmanuel Gros","orcid":null},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"P. E. Gros","raw_affiliation_strings":["Universit\u00e9 Paris SUD XI, Orsay (France)"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris SUD XI, Orsay (France)","institution_ids":["https://openalex.org/I102197404"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113667468","display_name":"Joan H\u00e9risson","orcid":null},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"J. H\u00e9risson","raw_affiliation_strings":["Universit\u00e9 Paris SUD XI, Orsay (France)"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris SUD XI, Orsay (France)","institution_ids":["https://openalex.org/I102197404"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066466927","display_name":"Rachid Gherbi","orcid":"https://orcid.org/0009-0003-6303-2907"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"R. Gherbi","raw_affiliation_strings":["Universit\u00e9 Paris SUD XI, Orsay (France)"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris SUD XI, Orsay (France)","institution_ids":["https://openalex.org/I102197404"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5062588006"],"corresponding_institution_ids":["https://openalex.org/I102197404"],"apc_list":null,"apc_paid":null,"fwci":0.2972,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.59414814,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"143","last_page":"146"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11439","display_name":"Video Analysis and Summarization","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9495000243186951,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7826346158981323},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7096009254455566},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.5898967981338501},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5093060731887817},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.49772408604621887},{"id":"https://openalex.org/keywords/external-data-representation","display_name":"External Data Representation","score":0.4848986268043518},{"id":"https://openalex.org/keywords/zoom","display_name":"Zoom","score":0.4804746210575104},{"id":"https://openalex.org/keywords/virtual-reality","display_name":"Virtual reality","score":0.4774497151374817},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4157167971134186},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41557803750038147},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4150680899620056},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.413971483707428},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3210952579975128},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.172268807888031}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7826346158981323},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7096009254455566},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.5898967981338501},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5093060731887817},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.49772408604621887},{"id":"https://openalex.org/C116409475","wikidata":"https://www.wikidata.org/wiki/Q1385056","display_name":"External Data Representation","level":2,"score":0.4848986268043518},{"id":"https://openalex.org/C124913957","wikidata":"https://www.wikidata.org/wiki/Q1232548","display_name":"Zoom","level":3,"score":0.4804746210575104},{"id":"https://openalex.org/C194969405","wikidata":"https://www.wikidata.org/wiki/Q170519","display_name":"Virtual reality","level":2,"score":0.4774497151374817},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4157167971134186},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41557803750038147},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4150680899620056},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.413971483707428},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3210952579975128},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.172268807888031},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C15336307","wikidata":"https://www.wikidata.org/wiki/Q1766051","display_name":"Lens (geology)","level":2,"score":0.0},{"id":"https://openalex.org/C78762247","wikidata":"https://www.wikidata.org/wiki/Q1273174","display_name":"Petroleum engineering","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/1101389.1101418","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1101389.1101418","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 3rd international conference on Computer graphics and interactive techniques in Australasia and South East Asia","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:0705.1535","is_oa":true,"landing_page_url":"http://arxiv.org/abs/0705.1535","pdf_url":"https://arxiv.org/pdf/0705.1535","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:HAL:hal-00145610v1","is_oa":true,"landing_page_url":"https://hal.science/hal-00145610","pdf_url":"https://hal.science/hal-00145610v1/document","source":{"id":"https://openalex.org/S4406922461","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"GRAPHITE 2005, 3rd International Conference On Computer Graphics and Interactives Techniques In Autralia and Southeast Asia, Nov 2005, Dunedin, New Zealand. pp.143-146, ⟨10.1145/1101389.1101418⟩","raw_type":"Conference papers"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:0705.1535","is_oa":true,"landing_page_url":"http://arxiv.org/abs/0705.1535","pdf_url":"https://arxiv.org/pdf/0705.1535","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320324471","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1505812915","https://openalex.org/W2003185322","https://openalex.org/W2111643161","https://openalex.org/W2114819775","https://openalex.org/W2150926065","https://openalex.org/W2161358754","https://openalex.org/W2167482691","https://openalex.org/W2287868938","https://openalex.org/W3022981850","https://openalex.org/W6777060225"],"related_works":["https://openalex.org/W4313443867","https://openalex.org/W1994605287","https://openalex.org/W1996424025","https://openalex.org/W3213326593","https://openalex.org/W2329521575","https://openalex.org/W3082457272","https://openalex.org/W2556321440","https://openalex.org/W4282969634","https://openalex.org/W4280602525","https://openalex.org/W3171996199"],"abstract_inverted_index":{"Biologists":[0],"are":[1,57,154],"leading":[2],"current":[3],"research":[4],"on":[5,139,157,167],"genome":[6,20],"characterization":[7],"(sequencing,":[8],"alignment,":[9],"transcription),":[10],"providing":[11],"a":[12,70,113,118,140],"huge":[13,59],"quantity":[14,61],"of":[15,108,126,130,152],"raw":[16,26],"data":[17,27,36,52,56,74,82,128,153],"about":[18],"many":[19],"organisms.":[21],"Extracting":[22],"knowledge":[23],"from":[24],"this":[25,66],"is":[28,41,137],"an":[29,97],"important":[30],"process":[31],"for":[32],"biologists,":[33],"using":[34,49],"usually":[35],"mining":[37,53,75],"approaches.":[38],"However,":[39],"it":[40],"difficult":[42],"to":[43,103,160],"deals":[44],"with":[45,89,105],"these":[46],"genomic":[47,127,162],"information":[48],"actual":[50],"bioinformatics":[51],"tools,":[54],"because":[55],"heterogeneous,":[58],"in":[60,96,112],"and":[62,76,93,133,143,148,170],"geographically":[63],"distributed.":[64],"In":[65],"paper,":[67],"we":[68],"present":[69,117],"new":[71],"approach":[72],"between":[73],"virtual":[77],"reality":[78],"visualization,":[79,129],"called":[80],"visual":[81],"mining.":[83],"Indeed":[84],"Virtual":[85],"Reality":[86],"becomes":[87],"ripe,":[88],"efficient":[90],"display":[91],"devices":[92],"intuitive":[94],"interaction":[95,144],"immersive":[98],"context.":[99,115],"Moreover,":[100],"biologists":[101],"use":[102],"work":[104],"3D":[106],"representation":[107],"their":[109],"molecules,":[110],"but":[111],"desktop":[114],"We":[116],"software":[119],"solution,":[120],"Genome3DExplorer,":[121],"which":[122],"addresses":[123],"the":[124,158,168],"problem":[125],"scene":[131],"management":[132],"interaction.":[134],"This":[135],"solution":[136],"based":[138],"well-adapted":[141],"graphical":[142],"paradigm,":[145],"where":[146],"local":[147],"global":[149],"topological":[150],"characteristics":[151],"easily":[155],"visible,":[156],"contrary":[159],"traditional":[161],"database":[163],"browsers,":[164],"always":[165],"focused":[166],"zoom":[169],"details":[171],"level.":[172]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-07T16:01:11.037858","created_date":"2025-10-10T00:00:00"}