{"id":"https://openalex.org/W1983714155","doi":"https://doi.org/10.1145/1084805.1084809","title":"An approach for pipelining nested collections in scientific workflows","display_name":"An approach for pipelining nested collections in scientific workflows","publication_year":2005,"publication_date":"2005-09-01","ids":{"openalex":"https://openalex.org/W1983714155","doi":"https://doi.org/10.1145/1084805.1084809","mag":"1983714155"},"language":"en","primary_location":{"id":"doi:10.1145/1084805.1084809","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1084805.1084809","pdf_url":null,"source":{"id":"https://openalex.org/S47508943","display_name":"ACM SIGMOD Record","issn_l":"0163-5808","issn":["0163-5808","1943-5835"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM SIGMOD Record","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112454332","display_name":"Timothy McPhillips","orcid":"https://orcid.org/0000-0002-8238-2449"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Timothy M. McPhillips","raw_affiliation_strings":["Natural Diversity Discovery Project"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Natural Diversity Discovery Project","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014091778","display_name":"Shawn Bowers","orcid":"https://orcid.org/0000-0002-2972-0197"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shawn Bowers","raw_affiliation_strings":["UC Davis Genome Center","UC Davis Genome Center#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Davis Genome Center","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"UC Davis Genome Center#TAB#","institution_ids":["https://openalex.org/I84218800"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":10.9746,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.97809401,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"34","issue":"3","first_page":"12","last_page":"17"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8991993069648743},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.866486668586731},{"id":"https://openalex.org/keywords/workflow-management-system","display_name":"Workflow management system","score":0.6073375344276428},{"id":"https://openalex.org/keywords/workflow-technology","display_name":"Workflow technology","score":0.5560294985771179},{"id":"https://openalex.org/keywords/reuse","display_name":"Reuse","score":0.5432024002075195},{"id":"https://openalex.org/keywords/dataflow","display_name":"Dataflow","score":0.5360434651374817},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.4800932705402374},{"id":"https://openalex.org/keywords/workflow-engine","display_name":"Workflow engine","score":0.4598686397075653},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.41026151180267334},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3919999301433563},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3802682161331177},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.33498236536979675},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21904796361923218}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8991993069648743},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.866486668586731},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.6073375344276428},{"id":"https://openalex.org/C19612761","wikidata":"https://www.wikidata.org/wiki/Q8034836","display_name":"Workflow technology","level":3,"score":0.5560294985771179},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.5432024002075195},{"id":"https://openalex.org/C96324660","wikidata":"https://www.wikidata.org/wiki/Q205446","display_name":"Dataflow","level":2,"score":0.5360434651374817},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.4800932705402374},{"id":"https://openalex.org/C188220564","wikidata":"https://www.wikidata.org/wiki/Q3325097","display_name":"Workflow engine","level":3,"score":0.4598686397075653},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.41026151180267334},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3919999301433563},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3802682161331177},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.33498236536979675},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21904796361923218},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1084805.1084809","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1084805.1084809","pdf_url":null,"source":{"id":"https://openalex.org/S47508943","display_name":"ACM SIGMOD Record","issn_l":"0163-5808","issn":["0163-5808","1943-5835"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM SIGMOD Record","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.46000000834465027,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W29788477","https://openalex.org/W67041390","https://openalex.org/W1526508038","https://openalex.org/W1557045817","https://openalex.org/W1983833794","https://openalex.org/W2075043513","https://openalex.org/W2091842814","https://openalex.org/W2100412820","https://openalex.org/W2117495487","https://openalex.org/W2127044011","https://openalex.org/W2130872776","https://openalex.org/W2132851185","https://openalex.org/W2141384558","https://openalex.org/W2143796166","https://openalex.org/W2168103533","https://openalex.org/W3012463740"],"related_works":["https://openalex.org/W2379425324","https://openalex.org/W2373541195","https://openalex.org/W2376410910","https://openalex.org/W2091596831","https://openalex.org/W2365658322","https://openalex.org/W2352344200","https://openalex.org/W329008868","https://openalex.org/W2367975678","https://openalex.org/W2375552622","https://openalex.org/W2906819665"],"abstract_inverted_index":{"We":[0,78,89],"describe":[1,91],"an":[2,131],"approach":[3,13,81,132],"for":[4,38,85,99,127],"pipelining":[5],"nested":[6,17],"data":[7,20],"collections":[8,18],"in":[9],"scientific":[10,128],"workflows.":[11],"Our":[12,42],"logically":[14],"delimits":[15],"arbitrarily":[16],"of":[19,56,63,71,104,118,140],"tokens":[21,26],"using":[22,82],"special,":[23],"paired":[24],"control":[25],"inserted":[27],"into":[28],"token":[29,76],"streams,":[30],"and":[31,65,67,73,102,142,145],"provides":[32,44],"workflow":[33,57,84,105,129,146],"components":[34,106],"with":[35],"high-level":[36],"operations":[37],"managing":[39],"these":[40],"collections.":[41],"framework":[43],"new":[45,125],"capabilities":[46],"for:":[47],"(1)":[48],"concurrent":[49],"operation":[50],"on":[51],"collections;":[52],"(2)":[53],"on-the-fly":[54],"customization":[55],"component":[58],"behavior;":[59],"(3)":[60],"improved":[61],"handling":[62],"exceptions":[64],"faults;":[66],"(4)":[68],"transparent":[69],"passing":[70],"provenance":[72],"metadata":[74],"within":[75],"streams.":[77],"demonstrate":[79],"our":[80,115],"a":[83,112,124],"inferring":[86],"phylogenetic":[87],"trees.":[88],"also":[90],"future":[92],"extensions":[93],"to":[94],"support":[95],"richer":[96],"typing":[97],"mechanisms":[98],"facilitating":[100],"sharing":[101],"reuse":[103],"between":[107],"disciplines.":[108],"This":[109],"work":[110],"represents":[111],"step":[113],"towards":[114],"larger":[116],"goal":[117],"exploiting":[119],"collection-oriented":[120],"dataflow":[121],"programming":[122],"as":[123],"paradigm":[126],"systems,":[130],"we":[133],"believe":[134],"will":[135],"significantly":[136],"reduce":[137],"the":[138],"complexity":[139],"creating":[141],"reusing":[143],"workflows":[144],"components.":[147]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
