{"id":"https://openalex.org/W2161668410","doi":"https://doi.org/10.1145/1081870.1081892","title":"Simple and effective visual models for gene expression cancer diagnostics","display_name":"Simple and effective visual models for gene expression cancer diagnostics","publication_year":2005,"publication_date":"2005-08-21","ids":{"openalex":"https://openalex.org/W2161668410","doi":"https://doi.org/10.1145/1081870.1081892","mag":"2161668410"},"language":"en","primary_location":{"id":"doi:10.1145/1081870.1081892","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1081870.1081892","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the eleventh ACM SIGKDD international conference on Knowledge discovery in data mining","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://repozitorij.uni-lj.si/IzpisGradiva.php?id=24306","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032945729","display_name":"Gregor Leban","orcid":"https://orcid.org/0000-0003-1193-5955"},"institutions":[{"id":"https://openalex.org/I153976015","display_name":"University of Ljubljana","ror":"https://ror.org/05njb9z20","country_code":"SI","type":"education","lineage":["https://openalex.org/I153976015"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Gregor Leban","raw_affiliation_strings":["University of Ljubljana, Tr\u017ea\u0161ka 25, Ljubljana, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ljubljana, Tr\u017ea\u0161ka 25, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063547256","display_name":"Minca Mramor","orcid":null},"institutions":[{"id":"https://openalex.org/I153976015","display_name":"University of Ljubljana","ror":"https://ror.org/05njb9z20","country_code":"SI","type":"education","lineage":["https://openalex.org/I153976015"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Minca Mramor","raw_affiliation_strings":["University of Ljubljana, Tr\u017ea\u0161ka 25, Ljubljana, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ljubljana, Tr\u017ea\u0161ka 25, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020641117","display_name":"Ivan Bratko","orcid":"https://orcid.org/0000-0002-3658-6555"},"institutions":[{"id":"https://openalex.org/I153976015","display_name":"University of Ljubljana","ror":"https://ror.org/05njb9z20","country_code":"SI","type":"education","lineage":["https://openalex.org/I153976015"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Ivan Bratko","raw_affiliation_strings":["University of Ljubljana, Tr\u017ea\u0161ka 25, Ljubljana, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ljubljana, Tr\u017ea\u0161ka 25, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073792028","display_name":"Bla\u017e Zupan","orcid":"https://orcid.org/0000-0002-5864-7056"},"institutions":[{"id":"https://openalex.org/I153976015","display_name":"University of Ljubljana","ror":"https://ror.org/05njb9z20","country_code":"SI","type":"education","lineage":["https://openalex.org/I153976015"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Blaz Zupan","raw_affiliation_strings":["University of Ljubljana, Tr\u017ea\u0161ka 25, Ljubljana, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ljubljana, Tr\u017ea\u0161ka 25, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1264,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.51821361,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"167","last_page":"176"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9610999822616577,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6467859745025635},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6039265990257263},{"id":"https://openalex.org/keywords/outlier","display_name":"Outlier","score":0.5762050151824951},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5072962641716003},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4984159469604492},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4655488431453705},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46115708351135254},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.45636317133903503},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44465357065200806},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4421994090080261},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.37421634793281555},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3729161322116852},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3454180955886841},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3225961923599243},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.31943440437316895},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2233683168888092},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.18165528774261475},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14709177613258362}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6467859745025635},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6039265990257263},{"id":"https://openalex.org/C79337645","wikidata":"https://www.wikidata.org/wiki/Q779824","display_name":"Outlier","level":2,"score":0.5762050151824951},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5072962641716003},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4984159469604492},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4655488431453705},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46115708351135254},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.45636317133903503},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44465357065200806},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4421994090080261},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.37421634793281555},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3729161322116852},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3454180955886841},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3225961923599243},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.31943440437316895},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2233683168888092},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.18165528774261475},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14709177613258362}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/1081870.1081892","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1081870.1081892","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the eleventh ACM SIGKDD international conference on Knowledge discovery in data mining","raw_type":"proceedings-article"},{"id":"pmh:oai:repozitorij.uni-lj.si:IzpisGradiva.php?id=24306","is_oa":true,"landing_page_url":"https://repozitorij.uni-lj.si/IzpisGradiva.php?id=24306","pdf_url":null,"source":{"id":"https://openalex.org/S4377196268","display_name":"Repository of the University of Ljubljana (University of Ljubljana)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I153976015","host_organization_name":"University of Ljubljana","host_organization_lineage":["https://openalex.org/I153976015"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"}],"best_oa_location":{"id":"pmh:oai:repozitorij.uni-lj.si:IzpisGradiva.php?id=24306","is_oa":true,"landing_page_url":"https://repozitorij.uni-lj.si/IzpisGradiva.php?id=24306","pdf_url":null,"source":{"id":"https://openalex.org/S4377196268","display_name":"Repository of the University of Ljubljana (University of Ljubljana)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I153976015","host_organization_name":"University of Ljubljana","host_organization_lineage":["https://openalex.org/I153976015"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6200000047683716}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W27968979","https://openalex.org/W37501892","https://openalex.org/W172019652","https://openalex.org/W1512547313","https://openalex.org/W1551136530","https://openalex.org/W1610836425","https://openalex.org/W1727290854","https://openalex.org/W1827848544","https://openalex.org/W1986853856","https://openalex.org/W2034269086","https://openalex.org/W2064208261","https://openalex.org/W2088851040","https://openalex.org/W2097413644","https://openalex.org/W2105432836","https://openalex.org/W2109363337","https://openalex.org/W2109643392","https://openalex.org/W2115358726","https://openalex.org/W2124704116","https://openalex.org/W2159400887","https://openalex.org/W2168121212","https://openalex.org/W2611031990","https://openalex.org/W4246697467","https://openalex.org/W4255555920","https://openalex.org/W6603092227","https://openalex.org/W6630591150","https://openalex.org/W6676457291"],"related_works":["https://openalex.org/W2013728941","https://openalex.org/W4225274103","https://openalex.org/W2579659702","https://openalex.org/W2154046714","https://openalex.org/W1965329638","https://openalex.org/W2189613078","https://openalex.org/W2923661510","https://openalex.org/W1574055964","https://openalex.org/W2542318691","https://openalex.org/W3160708108"],"abstract_inverted_index":{"In":[0,138],"the":[1,41,55,72],"paper":[2,42],"we":[3],"show":[4,115],"that":[5,77,95,116],"diagnostic":[6],"classes":[7],"in":[8,40,71,170],"cancer":[9,75,146,171],"gene":[10,111,144,161],"expression":[11,112,145],"data":[12,113,123,172],"sets,":[13],"which":[14,48],"most":[15],"often":[16],"include":[17,78],"thousands":[18],"of":[19,60,74,110,129,156],"features":[20],"(genes),":[21],"may":[22],"be":[23,97],"effectively":[24],"separated":[25],"with":[26,125],"simple":[27],"two-dimensional":[28],"plots":[29],"such":[30],"as":[31],"scatterplot":[32],"and":[33,53,84,91,100,134,149,163,167],"radviz":[34],"graph.":[35],"The":[36],"principal":[37],"innovation":[38],"proposed":[39],"is":[43,49,89],"a":[44,108,126],"method":[45],"called":[46],"VizRank,":[47],"able":[50,120],"to":[51,66,121,131,140,165],"score":[52],"identify":[54,153],"best":[56],"among":[57],"possibly":[58],"millions":[59],"candidate":[61],"projections":[62],"for":[63,143],"visualizations.":[64],"Compared":[65],"recently":[67],"much":[68],"applied":[69],"techniques":[70],"field":[73],"genomics":[76],"neural":[79],"networks,":[80],"support":[81],"vector":[82],"machines":[83],"various":[85],"ensemble-based":[86],"approaches,":[87],"VizRank":[88,117,148],"fast":[90],"finds":[92],"visualization":[93],"models":[94],"can":[96],"easily":[98],"examined":[99],"interpreted":[101],"by":[102],"domain":[103],"experts.":[104],"Our":[105],"experiments":[106],"on":[107],"number":[109,128],"sets":[114,155],"was":[118],"always":[119],"find":[122],"visualizations":[124,151],"small":[127,154],"(two":[130],"seven)":[132],"genes":[133],"excellent":[135],"class":[136],"separation.":[137],"addition":[139],"providing":[141],"grounds":[142],"diagnosis,":[147],"its":[150],"also":[152],"relevant":[157],"genes,":[158],"uncover":[159],"interesting":[160],"interactions":[162],"point":[164],"outliers":[166],"potential":[168],"misclassifications":[169],"sets.":[173]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
