{"id":"https://openalex.org/W2011397439","doi":"https://doi.org/10.1145/1068009.1068076","title":"A GA for maximum likelihood phylogenetic inference using neighbour-joining as a genotype to phenotype mapping","display_name":"A GA for maximum likelihood phylogenetic inference using neighbour-joining as a genotype to phenotype mapping","publication_year":2005,"publication_date":"2005-06-25","ids":{"openalex":"https://openalex.org/W2011397439","doi":"https://doi.org/10.1145/1068009.1068076","mag":"2011397439"},"language":"en","primary_location":{"id":"doi:10.1145/1068009.1068076","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1068009.1068076","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th annual conference on Genetic and evolutionary computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017754858","display_name":"L. Poladian","orcid":"https://orcid.org/0000-0001-7110-0031"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Leon Poladian","raw_affiliation_strings":["University of Sydney, Sydney, Australia","University of Sydney; Sydney; Australia"],"affiliations":[{"raw_affiliation_string":"University of Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"University of Sydney; Sydney; Australia","institution_ids":["https://openalex.org/I129604602"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5017754858"],"corresponding_institution_ids":["https://openalex.org/I129604602"],"apc_list":null,"apc_paid":null,"fwci":0.6153,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.64740389,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"415","last_page":"422"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9794999957084656,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.8754940629005432},{"id":"https://openalex.org/keywords/tree-rearrangement","display_name":"Tree rearrangement","score":0.874389111995697},{"id":"https://openalex.org/keywords/computational-phylogenetics","display_name":"Computational phylogenetics","score":0.7514748573303223},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7288240790367126},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.6049456000328064},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6005082130432129},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5101383328437805},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.4816495478153229},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42758065462112427},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4275706112384796},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4118434190750122},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.35680466890335083},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35040509700775146},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2198905646800995},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.17614257335662842},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14438548684120178}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8754940629005432},{"id":"https://openalex.org/C53208351","wikidata":"https://www.wikidata.org/wiki/Q7837630","display_name":"Tree rearrangement","level":4,"score":0.874389111995697},{"id":"https://openalex.org/C41168302","wikidata":"https://www.wikidata.org/wiki/Q3772859","display_name":"Computational phylogenetics","level":5,"score":0.7514748573303223},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7288240790367126},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.6049456000328064},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6005082130432129},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5101383328437805},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.4816495478153229},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42758065462112427},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4275706112384796},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4118434190750122},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.35680466890335083},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35040509700775146},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2198905646800995},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.17614257335662842},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14438548684120178},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1068009.1068076","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1068009.1068076","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th annual conference on Genetic and evolutionary computation","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W2443240","https://openalex.org/W75803897","https://openalex.org/W225560312","https://openalex.org/W243424403","https://openalex.org/W1519277610","https://openalex.org/W1525734744","https://openalex.org/W1548273308","https://openalex.org/W1562488420","https://openalex.org/W1565902586","https://openalex.org/W1574390288","https://openalex.org/W1581057686","https://openalex.org/W1594483597","https://openalex.org/W1602438832","https://openalex.org/W1814244002","https://openalex.org/W1843274134","https://openalex.org/W1867732144","https://openalex.org/W1987728931","https://openalex.org/W1990284472","https://openalex.org/W2005471817","https://openalex.org/W2007346928","https://openalex.org/W2036652021","https://openalex.org/W2038751597","https://openalex.org/W2048132103","https://openalex.org/W2063389953","https://openalex.org/W2070919193","https://openalex.org/W2078650268","https://openalex.org/W2091378286","https://openalex.org/W2097706568","https://openalex.org/W2102424972","https://openalex.org/W2153684665","https://openalex.org/W2156166254","https://openalex.org/W2259225862","https://openalex.org/W2325535142","https://openalex.org/W3199943451","https://openalex.org/W4246001213","https://openalex.org/W4301005547"],"related_works":["https://openalex.org/W85430217","https://openalex.org/W4389053046","https://openalex.org/W2800044728","https://openalex.org/W3088015816","https://openalex.org/W2363720861","https://openalex.org/W2607237371","https://openalex.org/W4205930990","https://openalex.org/W4287661213","https://openalex.org/W112542519","https://openalex.org/W2604174992"],"abstract_inverted_index":{"Evolutionary":[0],"relationships":[1],"among":[2],"species":[3],"can":[4],"be":[5,81],"represented":[6],"by":[7,13],"a":[8,28,35,72],"phylogenetic":[9,50,63,108],"tree":[10,26,48],"and":[11,34,66,74,78],"inferred":[12],"optimising":[14],"some":[15,97],"measure":[16],"of":[17,24,30,41,45,91],"fitness,":[18],"such":[19],"as":[20],"the":[21,25,31,43,46,76,92,105],"statistical":[22],"likelihood":[23],"(given":[27],"model":[29],"evolutionary":[32],"process":[33],"data":[36],"set).":[37],"The":[38,86,100],"combinatorial":[39],"complexity":[40],"inferring":[42],"topology":[44],"best":[47],"makes":[49],"inference":[51,64,109],"ideal":[52],"for":[53,62],"genetic":[54],"algorithms.":[55],"In":[56],"this":[57],"paper,":[58],"two":[59],"existing":[60],"algorithms":[61],"(neighbour-joining":[65],"maximum":[67],"likelihood)":[68],"are":[69,94],"co-utilised":[70],"within":[71],"GA":[73,101],"enable":[75],"phenotype":[77],"genotype":[79],"to":[80,104],"assigned":[82],"quite":[83],"different":[84],"representations.":[85],"exploration":[87],"vs.":[88],"exploitation":[89],"aspects":[90],"algorithm":[93],"examined":[95],"in":[96],"test":[98],"cases.":[99],"is":[102],"compared":[103],"well":[106],"known":[107],"program":[110],"PHYLIP.":[111]},"counts_by_year":[{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
