{"id":"https://openalex.org/W1972555608","doi":"https://doi.org/10.1145/1068009.1068074","title":"Discovering biological motifs with genetic programming","display_name":"Discovering biological motifs with genetic programming","publication_year":2005,"publication_date":"2005-06-25","ids":{"openalex":"https://openalex.org/W1972555608","doi":"https://doi.org/10.1145/1068009.1068074","mag":"1972555608"},"language":"en","primary_location":{"id":"doi:10.1145/1068009.1068074","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1068009.1068074","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th annual conference on Genetic and evolutionary computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022304674","display_name":"Rolv Seehuus","orcid":null},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Rolv Seehuus","raw_affiliation_strings":["Norwegian University of Science and Technology, Trondheim, NORWAY","(Norwegian University of Science and Technology, Trondheim, Norway)"],"affiliations":[{"raw_affiliation_string":"Norwegian University of Science and Technology, Trondheim, NORWAY","institution_ids":["https://openalex.org/I204778367"]},{"raw_affiliation_string":"(Norwegian University of Science and Technology, Trondheim, Norway)","institution_ids":["https://openalex.org/I204778367"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072229837","display_name":"Amund Tveit","orcid":null},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Amund Tveit","raw_affiliation_strings":["Norwegian University of Science and Technology, Trondheim, NORWAY","(Norwegian University of Science and Technology, Trondheim, Norway)"],"affiliations":[{"raw_affiliation_string":"Norwegian University of Science and Technology, Trondheim, NORWAY","institution_ids":["https://openalex.org/I204778367"]},{"raw_affiliation_string":"(Norwegian University of Science and Technology, Trondheim, Norway)","institution_ids":["https://openalex.org/I204778367"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001360714","display_name":"Ole Edsberg","orcid":null},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ole Edsberg","raw_affiliation_strings":["Norwegian University of Science and Technology, Trondheim, NORWAY","(Norwegian University of Science and Technology, Trondheim, Norway)"],"affiliations":[{"raw_affiliation_string":"Norwegian University of Science and Technology, Trondheim, NORWAY","institution_ids":["https://openalex.org/I204778367"]},{"raw_affiliation_string":"(Norwegian University of Science and Technology, Trondheim, Norway)","institution_ids":["https://openalex.org/I204778367"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5022304674"],"corresponding_institution_ids":["https://openalex.org/I204778367"],"apc_list":null,"apc_paid":null,"fwci":1.8268,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.87078034,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"401","last_page":"408"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10100","display_name":"Metaheuristic Optimization Algorithms Research","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genetic-programming","display_name":"Genetic programming","score":0.8934744596481323},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7259763479232788},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.6328588724136353},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5673421025276184},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4835324287414551},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.4176713228225708},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37585926055908203},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.33525776863098145}],"concepts":[{"id":"https://openalex.org/C110332635","wikidata":"https://www.wikidata.org/wiki/Q629498","display_name":"Genetic programming","level":2,"score":0.8934744596481323},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7259763479232788},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.6328588724136353},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5673421025276184},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4835324287414551},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.4176713228225708},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37585926055908203},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.33525776863098145},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/1068009.1068074","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1068009.1068074","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th annual conference on Genetic and evolutionary computation","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.152.7791","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.152.7791","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.bham.ac.uk/~wbl/biblio/gecco2005/docs/p401.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6100000143051147,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W58691558","https://openalex.org/W196322233","https://openalex.org/W237501215","https://openalex.org/W1481595788","https://openalex.org/W1536518108","https://openalex.org/W1559638430","https://openalex.org/W1993026013","https://openalex.org/W2009566340","https://openalex.org/W2030042950","https://openalex.org/W2058727381","https://openalex.org/W2099684647","https://openalex.org/W2112076978","https://openalex.org/W2112865076","https://openalex.org/W2126903293","https://openalex.org/W2126975650","https://openalex.org/W2138745909","https://openalex.org/W2148853951","https://openalex.org/W2151397744","https://openalex.org/W2162828041","https://openalex.org/W2279435443","https://openalex.org/W2911740249","https://openalex.org/W6676769703"],"related_works":["https://openalex.org/W3170299350","https://openalex.org/W2368410102","https://openalex.org/W2605676258","https://openalex.org/W2368037387","https://openalex.org/W190186656","https://openalex.org/W2902352756","https://openalex.org/W2377079823","https://openalex.org/W2953439652","https://openalex.org/W2599962286","https://openalex.org/W2319582300"],"abstract_inverted_index":{"Choosing":[0],"the":[1,86,128,131],"right":[2],"representation":[3],"for":[4,19,115,125],"a":[5,14,29,42,99],"problem":[6],"is":[7,122],"important.":[8],"In":[9,41],"this":[10],"article":[11],"we":[12,26,48,76,90],"introduce":[13],"linear":[15,106],"genetic":[16,37,113],"programming":[17,38,114],"approach":[18,34],"motif":[20],"discovery":[21],"in":[22,61,97],"protein":[23,46,88,104],"families,":[24,47],"and":[25,35,57],"also":[27],"present":[28],"thorough":[30],"comparison":[31],"between":[32],"our":[33,51],"Koza-style":[36,112],"using":[39,79],"ADFs.":[40],"study":[43],"of":[44,63,70,85,103,117,127],"45":[45,118],"demonstrate":[49],"that":[50,68],"algorithm,":[52],"given":[53],"equal":[54],"processing":[55],"resources":[56],"no":[58],"prior":[59],"knowledge":[60],"shaping":[62],"datasets,":[64],"consistently":[65],"generates":[66],"motifs":[67,92],"are":[69],"significantly":[71],"better":[72,109],"quality":[73],"than":[74,111],"those":[75,95],"found":[77,96],"by":[78],"trees":[80],"as":[81],"representation.":[82],"For":[83],"several":[84],"studied":[87],"families":[89,129],"evolve":[91],"comparable":[93],"to":[94],"Prosite,":[98],"manually":[100],"curated":[101],"database":[102],"motifs.Our":[105],"genome":[107],"gave":[108],"results":[110],"37":[116],"families.":[119],"The":[120],"difference":[121],"statistically":[123],"significant":[124],"24":[126],"at":[130],"99%":[132],"confidence":[133],"level.":[134]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
