{"id":"https://openalex.org/W2064182055","doi":"https://doi.org/10.1145/1066677.1066721","title":"Design and evaluation of CATPA","display_name":"Design and evaluation of CATPA","publication_year":2005,"publication_date":"2005-03-13","ids":{"openalex":"https://openalex.org/W2064182055","doi":"https://doi.org/10.1145/1066677.1066721","mag":"2064182055"},"language":"en","primary_location":{"id":"doi:10.1145/1066677.1066721","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1066677.1066721","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2005 ACM symposium on Applied computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081672389","display_name":"Mehmet Dalk\u0131l\u0131\u00e7","orcid":"https://orcid.org/0000-0002-0776-7365"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mehmet M. Dalkilic","raw_affiliation_strings":["Indiana University, Bloomington, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University, Bloomington, Indiana","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087208521","display_name":"Arijit Sengupta","orcid":"https://orcid.org/0000-0003-2591-2578"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arijit Sengupta","raw_affiliation_strings":["Indiana University, Bloomington, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University, Bloomington, Indiana","institution_ids":["https://openalex.org/I4210119109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10158947,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"190","last_page":"194"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9843000173568726,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.8342640399932861},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7846012115478516},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5472755432128906},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5255659818649292},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.4645613729953766},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4637940526008606},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4248712360858917},{"id":"https://openalex.org/keywords/order","display_name":"Order (exchange)","score":0.41335248947143555},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.39266976714134216},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3438461422920227},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.25474607944488525},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11847171187400818},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.11795905232429504}],"concepts":[{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.8342640399932861},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7846012115478516},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5472755432128906},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5255659818649292},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.4645613729953766},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4637940526008606},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4248712360858917},{"id":"https://openalex.org/C182306322","wikidata":"https://www.wikidata.org/wiki/Q1779371","display_name":"Order (exchange)","level":2,"score":0.41335248947143555},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.39266976714134216},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3438461422920227},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.25474607944488525},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11847171187400818},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.11795905232429504},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1066677.1066721","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1066677.1066721","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2005 ACM symposium on Applied computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W78451536","https://openalex.org/W107544894","https://openalex.org/W611430206","https://openalex.org/W632181965","https://openalex.org/W1493951357","https://openalex.org/W1508266759","https://openalex.org/W1512359138","https://openalex.org/W1528027857","https://openalex.org/W1592614241","https://openalex.org/W1592870802","https://openalex.org/W1597538863","https://openalex.org/W2002664886","https://openalex.org/W2028903194","https://openalex.org/W2032838501","https://openalex.org/W2032991899","https://openalex.org/W2036792999","https://openalex.org/W2109030836","https://openalex.org/W2110041134","https://openalex.org/W2115843776","https://openalex.org/W2118321916","https://openalex.org/W2122571913","https://openalex.org/W2124410686","https://openalex.org/W2127648442","https://openalex.org/W2131924932","https://openalex.org/W2140000393","https://openalex.org/W2141172196","https://openalex.org/W2141885858","https://openalex.org/W2143173841","https://openalex.org/W2147809382","https://openalex.org/W2148853951","https://openalex.org/W2155480785","https://openalex.org/W2164649389","https://openalex.org/W2167872870","https://openalex.org/W2325611247","https://openalex.org/W2476736896","https://openalex.org/W2600349519","https://openalex.org/W2916406266","https://openalex.org/W4240861547","https://openalex.org/W4388384043","https://openalex.org/W6629540275","https://openalex.org/W6658579335","https://openalex.org/W6678843004"],"related_works":["https://openalex.org/W4389670110","https://openalex.org/W2429057255","https://openalex.org/W2187546663","https://openalex.org/W148745890","https://openalex.org/W2611942503","https://openalex.org/W4315621326","https://openalex.org/W2899790217","https://openalex.org/W2598865957","https://openalex.org/W1576092969","https://openalex.org/W2524154428"],"abstract_inverted_index":{"We":[0],"present":[1],"a":[2,43,137,179,199,214],"new":[3],"application":[4],"for":[5,12,18,213],"experimental":[6],"biologists,":[7],"the":[8,19,91,96,99,114,118,122,156,163,171,194],"Curation":[9],"Alignment":[10],"Tool":[11],"Protein":[13,34],"Analysis":[14],"(CATPA),":[15],"that":[16,79,124,134,146],"allows":[17],"efficient":[20,210],"and":[21,27,45,57,103,159,182,202],"effective":[22,68],"creation,":[23],"storage,":[24],"management,":[25],"querying,":[26],"visualizing":[28],"of":[29,54,70,173,188,196,216,219],"experimentally":[30],"curated":[31],"protein":[32],"families.":[33],"families":[35],"in":[36,121],"general":[37],"include":[38],"paralogs":[39],"having":[40],"diverged":[41],"from":[42],"duplication":[44],"orthologs.":[46],"There":[47],"is":[48,76,120,136,143],"more":[49,58,153,209],"than":[50],"two":[51],"decades":[52],"worth":[53],"biological":[55,157],"information":[56,81,97,164],"data":[59,119,139],"emerging,":[60],"but":[61,129],"there":[62,135],"has":[63],"not":[64],"yet":[65],"been":[66],"an":[67,80],"means":[69],"dealing":[71],"with":[72,113,198],"this":[73,147,174],"data.":[74],"It":[75,142],"our":[77,144],"contention":[78],"system":[82,115],"could":[83],"be":[84,132],"created":[85],"whose":[86],"appearance":[87],"was":[88,190],"suitable":[89],"to":[90,151,168,192,206,207],"visual":[92],"nature-particularly":[93],"through":[94],"alignments-of":[95],"while":[98],"underpinnings":[100],"were":[101,204],"formal":[102,180],"followed":[104],"standard":[105],"software":[106],"engineering":[107],"principles.":[108],"Thus,":[109],"biologists":[110,150],"can":[111,131],"interact":[112],"easily":[116],"because":[117],"form":[123],"they":[125,130],"are":[126],"accustomed":[127],"to,":[128],"assured":[133],"sound":[138],"model":[140],"underneath.":[141],"hope":[145],"will":[148],"allow":[149],"spend":[152],"time":[154,161],"on":[155,162],"science":[158],"less":[160],"science.":[165],"In":[166],"order":[167],"help":[169],"evaluate":[170],"utility":[172],"system,":[175],"we":[176],"have":[177],"performed":[178,191],"quantitative":[181],"qualitative":[183],"usability":[184],"study.":[185],"Usability":[186],"evaluation":[187],"CATPA":[189,197,212],"compare":[193],"performance":[195],"similar":[200],"tool,":[201],"users":[203],"found":[205],"significantly":[208],"using":[211],"number":[215],"different":[217],"types":[218],"tasks.":[220]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
