{"id":"https://openalex.org/W1964215028","doi":"https://doi.org/10.1145/1066677.1066711","title":"A framework for result handling in bioinformatics","display_name":"A framework for result handling in bioinformatics","publication_year":2005,"publication_date":"2005-03-13","ids":{"openalex":"https://openalex.org/W1964215028","doi":"https://doi.org/10.1145/1066677.1066711","mag":"1964215028"},"language":"en","primary_location":{"id":"doi:10.1145/1066677.1066711","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1066677.1066711","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2005 ACM symposium on Applied computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039670580","display_name":"Andrei Oliveira da Silva","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Andrei Oliveira da Silva","raw_affiliation_strings":["LABIO - PPGCC, Porto Alegre - RS - Brazil"],"affiliations":[{"raw_affiliation_string":"LABIO - PPGCC, Porto Alegre - RS - Brazil","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064713906","display_name":"Osmar Norberto de Souza","orcid":"https://orcid.org/0000-0002-4602-1208"},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Osmar Norberto de Souza","raw_affiliation_strings":["LABIO - PPGCC - IPB / PUCRS, Alegre - RS - Brazil","LABIO - PPGCC - IPB / PUCRS, Alegre - RS - Brazil#TAB#"],"affiliations":[{"raw_affiliation_string":"LABIO - PPGCC - IPB / PUCRS, Alegre - RS - Brazil","institution_ids":["https://openalex.org/I45643870"]},{"raw_affiliation_string":"LABIO - PPGCC - IPB / PUCRS, Alegre - RS - Brazil#TAB#","institution_ids":["https://openalex.org/I45643870"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5039670580"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.1304908,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"128","last_page":"132"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7541593313217163},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.5720467567443848},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5460103750228882},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.48752209544181824},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.46521902084350586},{"id":"https://openalex.org/keywords/autodock","display_name":"AutoDock","score":0.4518801271915436},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3614494800567627},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.20151183009147644}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7541593313217163},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.5720467567443848},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5460103750228882},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.48752209544181824},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.46521902084350586},{"id":"https://openalex.org/C2780152424","wikidata":"https://www.wikidata.org/wiki/Q4826062","display_name":"AutoDock","level":4,"score":0.4518801271915436},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3614494800567627},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.20151183009147644},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1066677.1066711","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1066677.1066711","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2005 ACM symposium on Applied computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W41699526","https://openalex.org/W1485927255","https://openalex.org/W1649645444","https://openalex.org/W1797963394","https://openalex.org/W1964958542","https://openalex.org/W1983304433","https://openalex.org/W1985570405","https://openalex.org/W1985953075","https://openalex.org/W2003144438","https://openalex.org/W2004102775","https://openalex.org/W2021600068","https://openalex.org/W2091257550","https://openalex.org/W2093815829","https://openalex.org/W2099525660","https://openalex.org/W2111259717","https://openalex.org/W2111971626","https://openalex.org/W2111996486","https://openalex.org/W2134097564","https://openalex.org/W2140332639","https://openalex.org/W2142002702","https://openalex.org/W2148319892","https://openalex.org/W2153609988","https://openalex.org/W2153880162","https://openalex.org/W2913785580","https://openalex.org/W2949835970","https://openalex.org/W4213149192","https://openalex.org/W4241391257","https://openalex.org/W6601698369"],"related_works":["https://openalex.org/W1523821527","https://openalex.org/W2571978672","https://openalex.org/W2007257620","https://openalex.org/W1914280947","https://openalex.org/W1594539819","https://openalex.org/W4213038553","https://openalex.org/W2413373620","https://openalex.org/W1993039745","https://openalex.org/W1581129489","https://openalex.org/W2369252416"],"abstract_inverted_index":{"Bioinformatics":[0],"is":[1,15,23],"an":[2,114],"area":[3],"that":[4],"demands":[5],"the":[6,27,79,83,112,121,126,129,144,151,154,164],"management":[7],"of":[8,11,29,33,63,89],"large":[9,31,61,87],"amounts":[10,88],"data.":[12],"One":[13],"example":[14],"Computer":[16],"Assisted":[17],"Drug":[18],"Design":[19],"(CADD)":[20],"where":[21],"it":[22],"necessary":[24],"to":[25,56,75,82,100,124,142,160],"organize":[26,163],"results":[28,58,152],"a":[30,60,97,105],"number":[32,62],"protein-ligand":[34,135,155],"interaction":[35,156],"simulations.":[36],"Projects":[37],"such":[38],"as":[39],"The":[40,46,137],"United":[41],"Devices":[42],"Cancer":[43],"Research":[44],"Project,":[45],"Smallpox":[47],"Grid":[48],"Project":[49],"and":[50,77,128,162],"[email":[51],"protected]":[52],"use":[53],"grid":[54],"computing":[55],"gather":[57],"from":[59,153],"computers.":[64],"These":[65],"projects,":[66],"nonetheless,":[67],"have":[68],"particular":[69],"solutions,":[70],"developed":[71],"by":[72],"commercial":[73],"companies,":[74],"distribute":[76,125],"rank":[78],"results.":[80],"Due":[81],"need":[84],"for":[85,133],"handling":[86,101,147],"data":[90,103],"in":[91,158],"specific":[92],"formats,":[93],"this":[94],"work":[95],"presents":[96],"framework":[98],"dedicated":[99],"biological":[102],"with":[104],"case":[106],"study":[107],"on":[108],"CADD.":[109],"To":[110],"validate":[111],"implementation,":[113],"open":[115],"source":[116],"approach":[117],"was":[118,140],"employed":[119],"using":[120],"XtremWeb":[122,138],"platform":[123],"tasks,":[127],"software":[130],"AutoDock":[131],"3.0":[132],"simulating":[134],"interactions.":[136],"dispatcher":[139],"adapted":[141],"call":[143],"proposed":[145],"result":[146],"framework,":[148],"which":[149],"analyzes":[150],"outputs":[157],"order":[159],"extract":[161],"relevant":[165],"information.":[166]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
