{"id":"https://openalex.org/W2049183267","doi":"https://doi.org/10.1145/1066157.1066309","title":"Computing for biologists","display_name":"Computing for biologists","publication_year":2005,"publication_date":"2005-06-14","ids":{"openalex":"https://openalex.org/W2049183267","doi":"https://doi.org/10.1145/1066157.1066309","mag":"2049183267"},"language":"en","primary_location":{"id":"doi:10.1145/1066157.1066309","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1066157.1066309","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2005 ACM SIGMOD international conference on Management of data","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055576104","display_name":"Dennis Shasha","orcid":"https://orcid.org/0000-0002-7036-3312"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Dennis Shasha","raw_affiliation_strings":["New York University, New York, NY"],"affiliations":[{"raw_affiliation_string":"New York University, New York, NY","institution_ids":["https://openalex.org/I57206974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5055576104"],"corresponding_institution_ids":["https://openalex.org/I57206974"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08728147,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"968","last_page":"969"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/presentation","display_name":"Presentation (obstetrics)","score":0.8128551244735718},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7391196489334106},{"id":"https://openalex.org/keywords/appeal","display_name":"Appeal","score":0.6093786358833313},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5745078325271606},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5647331476211548},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.45605039596557617},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.42939993739128113},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.41421860456466675},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34068822860717773},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.16328877210617065}],"concepts":[{"id":"https://openalex.org/C2777601897","wikidata":"https://www.wikidata.org/wiki/Q3409113","display_name":"Presentation (obstetrics)","level":2,"score":0.8128551244735718},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7391196489334106},{"id":"https://openalex.org/C2778449503","wikidata":"https://www.wikidata.org/wiki/Q329777","display_name":"Appeal","level":2,"score":0.6093786358833313},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5745078325271606},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5647331476211548},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.45605039596557617},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.42939993739128113},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.41421860456466675},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34068822860717773},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.16328877210617065},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1066157.1066309","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1066157.1066309","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2005 ACM SIGMOD international conference on Management of data","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.47999998927116394,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W2000004737","https://openalex.org/W2067856961","https://openalex.org/W2084872146","https://openalex.org/W2094226631","https://openalex.org/W2110034858","https://openalex.org/W2124996875","https://openalex.org/W2145631416"],"related_works":["https://openalex.org/W2013728941","https://openalex.org/W4225274103","https://openalex.org/W2579659702","https://openalex.org/W2154046714","https://openalex.org/W2247618421","https://openalex.org/W1965329638","https://openalex.org/W2189613078","https://openalex.org/W2923661510","https://openalex.org/W1574055964","https://openalex.org/W2542318691"],"abstract_inverted_index":{"My":[0],"presentation":[1,17],"will":[2],"be":[3],"online":[4],"at":[5,12],"the":[6,13,38,44,50],"address":[7],"http://cs.nyu.edu/cs/faculty/shasha/papers/sigmodtut05.ppt":[8],"in":[9,98],"addition":[10],"to":[11,28,36,62,84,92,94,108],"SIGMOD":[14],"site.":[15],"The":[16],"discusses":[18],"computational":[19],"techniques":[20,35],"that":[21],"have":[22,72],"helped":[23],"biologists,":[24],"including":[25],"combinatorial":[26,103],"design":[27],"support":[29],"a":[30],"disciplined":[31],"experimental":[32],"design,":[33],"visualization":[34],"display":[37],"interaction":[39],"among":[40],"multiple":[41],"inputs,":[42],"and":[43,55,68,96,102],"discovery":[45],"of":[46],"gene":[47],"function":[48],"through":[49,52],"search":[51],"related":[53],"species,":[54],"others.In":[56],"this":[57],"writeup,":[58],"I":[59,71,78],"confine":[60],"myself":[61],"informal":[63],"remarks":[64],"describing":[65],"both":[66],"social":[67],"technical":[69],"lessons":[70],"learned":[73],"while":[74],"working":[75],"with":[76,82],"biologists.":[77,112],"intersperse":[79],"these":[80],"comments":[81],"references":[83],"relevant":[85],"papers":[86],"when":[87],"appropriate.The":[88],"tutorial":[89],"is":[90],"meant":[91],"appeal":[93],"researchers":[95],"practitioners":[97],"databases,":[99],"data":[100],"mining,":[101],"algorithms":[104],"as":[105,107],"well":[106],"natural":[109],"scientists,":[110],"especially":[111]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
