{"id":"https://openalex.org/W2132928827","doi":"https://doi.org/10.1145/1065385.1065400","title":"Visualizing aggregated biological pathway relations","display_name":"Visualizing aggregated biological pathway relations","publication_year":2005,"publication_date":"2005-06-07","ids":{"openalex":"https://openalex.org/W2132928827","doi":"https://doi.org/10.1145/1065385.1065400","mag":"2132928827"},"language":"en","primary_location":{"id":"doi:10.1145/1065385.1065400","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1065385.1065400","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th ACM/IEEE-CS joint conference on Digital libraries","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060334609","display_name":"Byron Marshall","orcid":"https://orcid.org/0000-0001-7109-6095"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Byron Marshall","raw_affiliation_strings":["University of Arizona, Tucson, AZ","Dept. of Manage. Inf. Syst., Arizona Univ., Tucson, AZ#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Arizona, Tucson, AZ","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"Dept. of Manage. Inf. Syst., Arizona Univ., Tucson, AZ#TAB#","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052810515","display_name":"Karin D. Quinones","orcid":null},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karin Qui\u00f1ones","raw_affiliation_strings":["University of Arizona, Tucson, AZ","Dept. of Manage. Inf. Syst., Arizona Univ., Tucson, AZ#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Arizona, Tucson, AZ","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"Dept. of Manage. Inf. Syst., Arizona Univ., Tucson, AZ#TAB#","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062377553","display_name":"Hua Su","orcid":"https://orcid.org/0000-0003-2344-3886"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hua Su","raw_affiliation_strings":["University of Arizona, Tucson, AZ","Dept. of Manage. Inf. Syst., Arizona Univ., Tucson, AZ#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Arizona, Tucson, AZ","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"Dept. of Manage. Inf. Syst., Arizona Univ., Tucson, AZ#TAB#","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049298041","display_name":"Shauna Eggers","orcid":null},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shauna Eggers","raw_affiliation_strings":["University of Arizona, Tucson, AZ","Dept. of Manage. Inf. Syst., Arizona Univ., Tucson, AZ#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Arizona, Tucson, AZ","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"Dept. of Manage. Inf. Syst., Arizona Univ., Tucson, AZ#TAB#","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109924510","display_name":"Hsinchun Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hsinchun Chen","raw_affiliation_strings":["University of Arizona, Tucson, AZ","Dept. of Manage. Inf. Syst., Arizona Univ., Tucson, AZ#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Arizona, Tucson, AZ","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"Dept. of Manage. Inf. Syst., Arizona Univ., Tucson, AZ#TAB#","institution_ids":["https://openalex.org/I138006243"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1264,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.5149116,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"67","last_page":"68"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9797000288963318,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7797173857688904},{"id":"https://openalex.org/keywords/digital-library","display_name":"Digital library","score":0.6934711337089539},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.6508656740188599},{"id":"https://openalex.org/keywords/granularity","display_name":"Granularity","score":0.5543712973594666},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5244569778442383},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.49852752685546875},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.45836907625198364},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.45595741271972656},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4520714581012726},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.42709311842918396}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7797173857688904},{"id":"https://openalex.org/C513874922","wikidata":"https://www.wikidata.org/wiki/Q212805","display_name":"Digital library","level":3,"score":0.6934711337089539},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.6508656740188599},{"id":"https://openalex.org/C177774035","wikidata":"https://www.wikidata.org/wiki/Q1246948","display_name":"Granularity","level":2,"score":0.5543712973594666},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5244569778442383},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.49852752685546875},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.45836907625198364},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.45595741271972656},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4520714581012726},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.42709311842918396},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C164913051","wikidata":"https://www.wikidata.org/wiki/Q482","display_name":"Poetry","level":2,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C124952713","wikidata":"https://www.wikidata.org/wiki/Q8242","display_name":"Literature","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/1065385.1065400","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1065385.1065400","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 5th ACM/IEEE-CS joint conference on Digital libraries","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.669.800","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.669.800","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://people.oregonstate.edu/%7Emarshaby/Papers/Marshall_JCDL_2005_Aggregation.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.4000000059604645,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2021005524","https://openalex.org/W2114090586","https://openalex.org/W2137881949"],"related_works":["https://openalex.org/W1608278265","https://openalex.org/W2048990642","https://openalex.org/W2097677915","https://openalex.org/W2278313610","https://openalex.org/W1649706580","https://openalex.org/W1186135329","https://openalex.org/W3195608031","https://openalex.org/W1979206663","https://openalex.org/W1498430983","https://openalex.org/W2047602962"],"abstract_inverted_index":{"The":[0],"Genescene":[1],"development":[2],"team":[3],"has":[4],"constructed":[5],"an":[6,52],"aggregation":[7],"interface":[8],"for":[9],"automatically-extracted":[10],"biomedical":[11],"pathway":[12],"relations":[13,44],"that":[14,63],"is":[15],"intended":[16],"to":[17],"help":[18],"researchers":[19],"identify":[20],"and":[21,54,79],"process":[22],"relevant":[23,77],"information":[24],"from":[25],"the":[26,34],"vast":[27],"digital":[28],"library":[29],"of":[30,37,48],"abstracts":[31],"found":[32],"in":[33,51],"National":[35],"Library":[36],"Medicine's":[38],"PubMed":[39],"collection.":[40],"Users":[41],"view":[42],"extracted":[43],"at":[45],"various":[46,71],"levels":[47],"relational":[49],"granularity":[50],"interactive":[53],"visual":[55,66],"node-link":[56],"interface.":[57],"Anecdotal":[58],"feedback":[59],"reported":[60],"here":[61],"suggests":[62],"this":[64],"multi-granular":[65],"paradigm":[67],"aligns":[68],"well":[69],"with":[70],"research":[72],"tasks,":[73],"helping":[74],"users":[75],"find":[76],"articles":[78],"discover":[80],"new":[81],"information.":[82]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
