{"id":"https://openalex.org/W2517111825","doi":"https://doi.org/10.1142/s1793351x16400080","title":"A Linked Data Visualiser for Finite Element Biosimulations","display_name":"A Linked Data Visualiser for Finite Element Biosimulations","publication_year":2016,"publication_date":"2016-06-01","ids":{"openalex":"https://openalex.org/W2517111825","doi":"https://doi.org/10.1142/s1793351x16400080","mag":"2517111825"},"language":"en","primary_location":{"id":"doi:10.1142/s1793351x16400080","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s1793351x16400080","pdf_url":null,"source":{"id":"https://openalex.org/S4210201727","display_name":"International Journal of Semantic Computing","issn_l":"1793-351X","issn":["1793-351X","1793-7108"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Semantic Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/10379/7454","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102991530","display_name":"Muntazir Mehdi","orcid":"https://orcid.org/0009-0005-6622-4714"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Muntazir Mehdi","raw_affiliation_strings":["Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045342137","display_name":"Yasar Khan","orcid":"https://orcid.org/0000-0003-1049-1977"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Yasar Khan","raw_affiliation_strings":["Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036151707","display_name":"Joao Jares","orcid":null},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Joao Jares","raw_affiliation_strings":["Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053978668","display_name":"Andr\u00e9 Freitas","orcid":null},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Andre Freitas","raw_affiliation_strings":["Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112212336","display_name":"Alok Kumar Jha","orcid":null},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Alok Kumar Jha","raw_affiliation_strings":["Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079931924","display_name":"Antonis I. Sakellarios","orcid":"https://orcid.org/0000-0002-2272-9543"},"institutions":[{"id":"https://openalex.org/I194019607","display_name":"University of Ioannina","ror":"https://ror.org/01qg3j183","country_code":"GR","type":"education","lineage":["https://openalex.org/I194019607"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Antonis Sakellarios","raw_affiliation_strings":["Department of Materials Science, University of Ioannina, GR 45110 Ioannina, Greece"],"affiliations":[{"raw_affiliation_string":"Department of Materials Science, University of Ioannina, GR 45110 Ioannina, Greece","institution_ids":["https://openalex.org/I194019607"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058460371","display_name":"Ratnesh Sahay","orcid":"https://orcid.org/0000-0003-4864-4174"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Ratnesh Sahay","raw_affiliation_strings":["Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5102991530"],"corresponding_institution_ids":["https://openalex.org/I188760350"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.06709637,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"10","issue":"02","first_page":"219","last_page":"245"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14427","display_name":"Environmental Monitoring and Data Management","score":0.9686999917030334,"subfield":{"id":"https://openalex.org/subfields/1907","display_name":"Geology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.949400007724762,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7788370847702026},{"id":"https://openalex.org/keywords/finite-element-method","display_name":"Finite element method","score":0.7648867964744568},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5619140267372131},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5076206922531128},{"id":"https://openalex.org/keywords/finite-volume-method","display_name":"Finite volume method","score":0.4937485158443451},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4538889229297638},{"id":"https://openalex.org/keywords/numerical-analysis","display_name":"Numerical analysis","score":0.4278990626335144},{"id":"https://openalex.org/keywords/experimental-data","display_name":"Experimental data","score":0.41734105348587036},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.40701550245285034},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.377351313829422},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.26147475838661194},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10764917731285095},{"id":"https://openalex.org/keywords/mechanics","display_name":"Mechanics","score":0.09678417444229126}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7788370847702026},{"id":"https://openalex.org/C135628077","wikidata":"https://www.wikidata.org/wiki/Q220184","display_name":"Finite element method","level":2,"score":0.7648867964744568},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5619140267372131},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5076206922531128},{"id":"https://openalex.org/C50478463","wikidata":"https://www.wikidata.org/wiki/Q1401936","display_name":"Finite volume method","level":2,"score":0.4937485158443451},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4538889229297638},{"id":"https://openalex.org/C48753275","wikidata":"https://www.wikidata.org/wiki/Q11216","display_name":"Numerical analysis","level":2,"score":0.4278990626335144},{"id":"https://openalex.org/C55037315","wikidata":"https://www.wikidata.org/wiki/Q5421151","display_name":"Experimental data","level":2,"score":0.41734105348587036},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.40701550245285034},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.377351313829422},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.26147475838661194},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10764917731285095},{"id":"https://openalex.org/C57879066","wikidata":"https://www.wikidata.org/wiki/Q41217","display_name":"Mechanics","level":1,"score":0.09678417444229126},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1142/s1793351x16400080","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s1793351x16400080","pdf_url":null,"source":{"id":"https://openalex.org/S4210201727","display_name":"International Journal of Semantic Computing","issn_l":"1793-351X","issn":["1793-351X","1793-7108"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Semantic Computing","raw_type":"journal-article"},{"id":"pmh:oai:https://researchrepository.universityofgalway.ie:10379/7454","is_oa":true,"landing_page_url":"http://hdl.handle.net/10379/7454","pdf_url":"http://hdl.handle.net/10379/7454","source":{"id":"https://openalex.org/S4377196322","display_name":"ARAN (University of Galway Research Repository) (Ollscoil na Gaillimhe \u2013 University of Galway)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I188760350","host_organization_name":"Ollscoil na Gaillimhe \u2013 University of Galway","host_organization_lineage":["https://openalex.org/I188760350"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"pmh:oai:https://researchrepository.universityofgalway.ie:10379/7454","is_oa":true,"landing_page_url":"http://hdl.handle.net/10379/7454","pdf_url":"http://hdl.handle.net/10379/7454","source":{"id":"https://openalex.org/S4377196322","display_name":"ARAN (University of Galway Research Repository) (Ollscoil na Gaillimhe \u2013 University of Galway)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I188760350","host_organization_name":"Ollscoil na Gaillimhe \u2013 University of Galway","host_organization_lineage":["https://openalex.org/I188760350"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1383882326","display_name":null,"funder_award_id":"SFI/12/RC/","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G2881606312","display_name":null,"funder_award_id":"SFI/12/RC/2289","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G5098725405","display_name":null,"funder_award_id":"12/RC/","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G6712843611","display_name":null,"funder_award_id":"12/RC/228","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G7362007176","display_name":null,"funder_award_id":"12/RC/2289","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"}],"funders":[{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2517111825.pdf","grobid_xml":"https://content.openalex.org/works/W2517111825.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1757909678","https://openalex.org/W2019094340","https://openalex.org/W2041228025","https://openalex.org/W2042880070","https://openalex.org/W2058128985","https://openalex.org/W2128268694","https://openalex.org/W2145435867","https://openalex.org/W2148014577","https://openalex.org/W2150908245","https://openalex.org/W2159092541","https://openalex.org/W4302050943"],"related_works":["https://openalex.org/W4225274103","https://openalex.org/W2013728941","https://openalex.org/W2154046714","https://openalex.org/W2579659702","https://openalex.org/W2189613078","https://openalex.org/W1574055964","https://openalex.org/W2923661510","https://openalex.org/W3003759491","https://openalex.org/W2542318691","https://openalex.org/W2547096368"],"abstract_inverted_index":{"Biosimulation":[0,44],"models":[1],"are":[2],"used":[3],"to":[4,26,38,88,115,142],"understand":[5],"the":[6,79,116,132,180],"multiple":[7],"or":[8],"different":[9,109,162],"causative":[10],"factors":[11],"that":[12,129],"cause":[13],"impairment":[14],"in":[15,78,183],"human":[16,35],"organs.":[17],"Finite":[18,41,152],"Element":[19,42,153],"Method":[20],"(FEM)":[21],"provide":[22],"a":[23,61,69],"mathematical":[24],"framework":[25],"simulate":[27],"dynamic":[28],"biological":[29],"systems,":[30],"with":[31],"applications":[32],"ranging":[33],"from":[34,95,161],"ear,":[36],"cardiovascular,":[37],"neurovascular":[39],"research.":[40],"(FE)":[43,154],"experiments":[45],"produce":[46],"huge":[47,56],"amounts":[48],"of":[49,81,111,134,164,186],"numerical":[50,57,101,123,136,155],"data.":[51,102,137],"Visualising":[52],"and":[53,84,91,98,146,150,157,175,188],"analysing":[54,151],"this":[55,65],"biosimulation":[58,93,122],"data":[59,124,156],"is":[60],"strenuous":[62],"task.":[63],"In":[64,113],"paper,":[66],"we":[67,118],"present":[68],"Linked":[70],"Data":[71],"Visualiser\u2013called":[72],"SIFEM":[73,104,139,181],"Visualiser\u2013to":[74],"help":[75,143],"domain-experts":[76],"(experts":[77],"field":[80],"ear":[82,166],"mechanics)":[83],"clinical":[85,147],"practitioners":[86,148],"(otorhinolaryngologists)":[87],"Visualise,":[89],"analyse":[90],"compare":[92],"results":[94,159],"heterogeneous,":[96],"complex,":[97],"high":[99],"volume":[100],"The":[103,138],"visualiser":[105],"builds":[106],"on":[107],"conceptualising":[108],"aspects":[110,163],"biosimulations.":[112],"addition":[114],"visualiser,":[117],"also":[119],"propose":[120],"how":[121],"can":[125],"be":[126],"conceptualised,":[127],"such":[128,170],"it":[130],"sustains":[131],"visualisation":[133],"large":[135],"Visualiser":[140,182],"aims":[141],"domain":[144],"scientists":[145],"exploring":[149],"simulation":[158],"obtained":[160],"inner":[165],"(Cochlear)":[167],"model":[168],"\u2014":[169],"as":[171],"biological,":[172],"geometrical,":[173],"mathematical,":[174],"physical":[176],"models.":[177],"We":[178],"validate":[179],"both":[184],"dimensions":[185],"qualitative":[187],"quantitative":[189],"evaluation.":[190]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
