{"id":"https://openalex.org/W2055207896","doi":"https://doi.org/10.1142/s1793351x08000476","title":"USING SCDL FOR INTEGRATING TOOLS AND DATA FOR COMPLEX BIOMEDICAL APPLICATIONS","display_name":"USING SCDL FOR INTEGRATING TOOLS AND DATA FOR COMPLEX BIOMEDICAL APPLICATIONS","publication_year":2008,"publication_date":"2008-06-01","ids":{"openalex":"https://openalex.org/W2055207896","doi":"https://doi.org/10.1142/s1793351x08000476","mag":"2055207896"},"language":"en","primary_location":{"id":"doi:10.1142/s1793351x08000476","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s1793351x08000476","pdf_url":null,"source":{"id":"https://openalex.org/S4210201727","display_name":"International Journal of Semantic Computing","issn_l":"1793-7108","issn":["1793-7108","1793-351X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Semantic Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041368442","display_name":"Shu Wang","orcid":"https://orcid.org/0000-0002-3598-6055"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"SHU WANG","raw_affiliation_strings":["Department of Electrical Engineering & Computer Science, University of California at Irvine, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering & Computer Science, University of California at Irvine, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108829441","display_name":"Rouh\u2010Mei Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I143578492","display_name":"Asia University","ror":"https://ror.org/038a1tp19","country_code":"TW","type":"education","lineage":["https://openalex.org/I143578492"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"ROUH-MEI HU","raw_affiliation_strings":["Department of Biotechnology, Asia University, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Asia University, Taiwan","institution_ids":["https://openalex.org/I143578492"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109206394","display_name":"Han C. W. Hsiao","orcid":null},"institutions":[{"id":"https://openalex.org/I143578492","display_name":"Asia University","ror":"https://ror.org/038a1tp19","country_code":"TW","type":"education","lineage":["https://openalex.org/I143578492"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"HAN C. W. HSIAO","raw_affiliation_strings":["Department of Bioinformatics, Asia University, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Asia University, Taiwan","institution_ids":["https://openalex.org/I143578492"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045410024","display_name":"David Hecht","orcid":"https://orcid.org/0000-0003-0949-2681"},"institutions":[{"id":"https://openalex.org/I143578492","display_name":"Asia University","ror":"https://ror.org/038a1tp19","country_code":"TW","type":"education","lineage":["https://openalex.org/I143578492"]},{"id":"https://openalex.org/I2799487676","display_name":"Arizona Christian University","ror":"https://ror.org/01j8znm98","country_code":"US","type":"education","lineage":["https://openalex.org/I2799487676"]}],"countries":["TW","US"],"is_corresponding":false,"raw_author_name":"DAVID A. HECHT","raw_affiliation_strings":["Department of Bioinformatics, Asia University, Taiwan","Department of Chemistry, Southwestern College, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Asia University, Taiwan","institution_ids":["https://openalex.org/I143578492"]},{"raw_affiliation_string":"Department of Chemistry, Southwestern College, USA","institution_ids":["https://openalex.org/I2799487676"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000975317","display_name":"Ka\u2010Lok Ng","orcid":"https://orcid.org/0000-0001-6315-6326"},"institutions":[{"id":"https://openalex.org/I143578492","display_name":"Asia University","ror":"https://ror.org/038a1tp19","country_code":"TW","type":"education","lineage":["https://openalex.org/I143578492"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"KA-LOK NG","raw_affiliation_strings":["Department of Bioinformatics, Asia University, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Asia University, Taiwan","institution_ids":["https://openalex.org/I143578492"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062219350","display_name":"Rong-Ming Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I134793997","display_name":"National University of Tainan","ror":"https://ror.org/020pqc882","country_code":"TW","type":"education","lineage":["https://openalex.org/I134793997"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"RONG-MING CHEN","raw_affiliation_strings":["Department of Computer Science & Information Engineering, National University of Tainan, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Information Engineering, National University of Tainan, Taiwan","institution_ids":["https://openalex.org/I134793997"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076927567","display_name":"Phillip C.\u2010Y. Sheu","orcid":"https://orcid.org/0000-0003-2036-850X"},"institutions":[{"id":"https://openalex.org/I143578492","display_name":"Asia University","ror":"https://ror.org/038a1tp19","country_code":"TW","type":"education","lineage":["https://openalex.org/I143578492"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"PHILLIP C.-Y. SHEU","raw_affiliation_strings":["Department of Bioinformatics, Asia University, Taiwan","Department of Electrical Engineering & Computer Science, University of California at Irvine, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Asia University, Taiwan","institution_ids":["https://openalex.org/I143578492"]},{"raw_affiliation_string":"Department of Electrical Engineering & Computer Science, University of California at Irvine, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018669587","display_name":"Jeffrey J. P. Tsai","orcid":"https://orcid.org/0000-0003-0473-5170"},"institutions":[{"id":"https://openalex.org/I143578492","display_name":"Asia University","ror":"https://ror.org/038a1tp19","country_code":"TW","type":"education","lineage":["https://openalex.org/I143578492"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["TW","US"],"is_corresponding":false,"raw_author_name":"JEFFREY J. P. TSAI","raw_affiliation_strings":["Department of Bioinformatics, Asia University, Taiwan","Department of Computer Science, University of Illinois at Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Asia University, Taiwan","institution_ids":["https://openalex.org/I143578492"]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, USA","institution_ids":["https://openalex.org/I39422238"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2599,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.57922685,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"02","issue":"02","first_page":"291","last_page":"308"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8932886123657227},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.652591347694397},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.6205845475196838},{"id":"https://openalex.org/keywords/bridging","display_name":"Bridging (networking)","score":0.5825332403182983},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.537301242351532},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4889191687107086},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.46548572182655334},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36398816108703613},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.27548953890800476},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2680141031742096}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8932886123657227},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.652591347694397},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.6205845475196838},{"id":"https://openalex.org/C174348530","wikidata":"https://www.wikidata.org/wiki/Q188635","display_name":"Bridging (networking)","level":2,"score":0.5825332403182983},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.537301242351532},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4889191687107086},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.46548572182655334},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36398816108703613},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.27548953890800476},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2680141031742096},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1142/s1793351x08000476","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s1793351x08000476","pdf_url":null,"source":{"id":"https://openalex.org/S4210201727","display_name":"International Journal of Semantic Computing","issn_l":"1793-7108","issn":["1793-7108","1793-351X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Semantic Computing","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320321851","display_name":"Fudan University","ror":"https://ror.org/013q1eq08"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W171705226","https://openalex.org/W1975140329","https://openalex.org/W1998282741","https://openalex.org/W2004855066","https://openalex.org/W2013490745","https://openalex.org/W2014840152","https://openalex.org/W2042385557","https://openalex.org/W2101181377","https://openalex.org/W2103802203","https://openalex.org/W2120558251","https://openalex.org/W2130479394","https://openalex.org/W2135030836","https://openalex.org/W2136280642","https://openalex.org/W2138270253","https://openalex.org/W2159482845","https://openalex.org/W2415031639","https://openalex.org/W2916288174","https://openalex.org/W4245803912"],"related_works":["https://openalex.org/W2093262417","https://openalex.org/W2123131699","https://openalex.org/W4388870064","https://openalex.org/W4235186151","https://openalex.org/W913131694","https://openalex.org/W650116260","https://openalex.org/W2056057048","https://openalex.org/W2378329187","https://openalex.org/W4390790060","https://openalex.org/W2134191509"],"abstract_inverted_index":{"Current":[0],"bioinformatics":[1],"tools":[2,23,47,64],"or":[3,174],"databases":[4,20,44],"are":[5,24,144],"very":[6],"heterogeneous":[7],"in":[8,70,111],"terms":[9],"of":[10,60,109],"data":[11,62],"formats,":[12],"database":[13],"schema,":[14],"and":[15,21,45,51,63,73,80,99,129],"terminologies.":[16],"Additionally,":[17],"most":[18],"biomedical":[19],"analysis":[22,46],"scattered":[25],"across":[26,32],"different":[27,34],"web":[28],"sites":[29],"making":[30],"interoperability":[31],"such":[33,57],"services":[35,177],"more":[36,175],"difficult.":[37],"It":[38],"is":[39,91],"desired":[40],"that":[41,58],"these":[42,161],"diverse":[43],"be":[48,77,155],"normalized,":[49],"integrated":[50],"encompassed":[52],"with":[53,67],"a":[54,74,126,169],"semantic":[55,103,116],"interface":[56],"users":[59],"biological":[61],"could":[65,76],"communicate":[66],"the":[68,88,107,115],"system":[69],"natural":[71],"language":[72,119,128],"workflow":[75],"automatically":[78],"generated":[79],"distributed":[81],"into":[82],"appropriate":[83],"tools.":[84],"In":[85],"this":[86],"paper,":[87],"BioSemantic":[89],"System":[90],"presented":[92],"to":[93,106,167,172],"bridge":[94],"complex":[95,149],"biological/biomedical":[96],"research":[97,113],"problems":[98,110],"computational":[100],"solutions":[101],"via":[102,157],"computing.":[104],"Due":[105],"diversity":[108],"various":[112],"fields,":[114],"capability":[117],"description":[118],"(SCDL)":[120],"plays":[121],"an":[122,165],"important":[123],"role":[124],"as":[125,137,139,146],"common":[127],"generic":[130],"form":[131],"for":[132],"problem":[133],"formalization.":[134],"Several":[135],"queries":[136,153],"well":[138],"their":[140],"corresponding":[141],"SCDL":[142,152],"descriptions":[143],"provided":[145],"examples.":[147],"For":[148,160],"applications,":[150],"multiple":[151],"may":[154],"connected":[156],"control":[158],"structures.":[159],"cases,":[162],"we":[163],"present":[164],"algorithm":[166],"map":[168],"user":[170],"request":[171],"one":[173],"existing":[176],"if":[178],"they":[179],"exist.":[180]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}