{"id":"https://openalex.org/W4416403783","doi":"https://doi.org/10.1142/s0219720025500209","title":"PLMABFW: A deep learning framework for predicting Antibody\u2013Antigen interactions using protein language model","display_name":"PLMABFW: A deep learning framework for predicting Antibody\u2013Antigen interactions using protein language model","publication_year":2025,"publication_date":"2025-11-20","ids":{"openalex":"https://openalex.org/W4416403783","doi":"https://doi.org/10.1142/s0219720025500209","pmid":"https://pubmed.ncbi.nlm.nih.gov/41403223"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720025500209","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720025500209","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087471164","display_name":"Yongbing Chen","orcid":"https://orcid.org/0000-0003-4536-2358"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210088164","display_name":"Changchun Institute of Optics, Fine Mechanics and Physics","ror":"https://ror.org/012rct222","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210088164"]},{"id":"https://openalex.org/I4210092888","display_name":"Changchun Institute of Applied Chemistry","ror":"https://ror.org/00h52n341","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210092888"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yongbing Chen","raw_affiliation_strings":["Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, State Key Laboratory of Pathogen and Biosecurity, Changchun, China","Key Laboratory of Jilin Province for Zoonosis Prevention and Control, Changchun, China","School of Information Science and Technology, and Center of AI for Science, Northeast Normal University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, State Key Laboratory of Pathogen and Biosecurity, Changchun, China","institution_ids":["https://openalex.org/I4210092888","https://openalex.org/I4210088164"]},{"raw_affiliation_string":"Key Laboratory of Jilin Province for Zoonosis Prevention and Control, Changchun, China","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"School of Information Science and Technology, and Center of AI for Science, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014248707","display_name":"Qiang Jia","orcid":"https://orcid.org/0000-0001-6689-5255"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qianyi Jia","raw_affiliation_strings":["School of Information Science and Technology, and Center of AI for Science, Northeast Normal University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, and Center of AI for Science, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038370451","display_name":"Xinyue Jia","orcid":null},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinyue Jia","raw_affiliation_strings":["School of Information Science and Technology, and Center of AI for Science, Northeast Normal University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, and Center of AI for Science, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114339809","display_name":"Zhiguo Fu","orcid":"https://orcid.org/0009-0008-4269-5134"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiguo Fu","raw_affiliation_strings":["School of Information Science and Technology, and Center of AI for Science, Northeast Normal University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, and Center of AI for Science, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120839754","display_name":"Pingping Sun","orcid":"https://orcid.org/0000-0002-9193-4321"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pingping Sun","raw_affiliation_strings":["School of Information Science and Technology, and Center of AI for Science, Northeast Normal University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, and Center of AI for Science, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100448714","display_name":"Bo Li","orcid":"https://orcid.org/0000-0002-7300-6003"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210163933","display_name":"Union Hospital","ror":"https://ror.org/055gkcy74","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210163933"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Li","raw_affiliation_strings":["Department of Gastrointestinal Colorectal and Anal Surgery, China-Japan Union Hospital of Jilin University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"Department of Gastrointestinal Colorectal and Anal Surgery, China-Japan Union Hospital of Jilin University, Changchun, China","institution_ids":["https://openalex.org/I4210163933","https://openalex.org/I194450716"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068356154","display_name":"Zilin Ren","orcid":"https://orcid.org/0000-0002-3621-1024"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210088164","display_name":"Changchun Institute of Optics, Fine Mechanics and Physics","ror":"https://ror.org/012rct222","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210088164"]},{"id":"https://openalex.org/I4210092888","display_name":"Changchun Institute of Applied Chemistry","ror":"https://ror.org/00h52n341","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210092888"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zilin Ren","raw_affiliation_strings":["Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, State Key Laboratory of Pathogen and Biosecurity, Changchun, China","Key Laboratory of Jilin Province for Zoonosis Prevention and Control, Changchun, China","School of Information Science and Technology, and Center of AI for Science, Northeast Normal University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, State Key Laboratory of Pathogen and Biosecurity, Changchun, China","institution_ids":["https://openalex.org/I4210092888","https://openalex.org/I4210088164"]},{"raw_affiliation_string":"Key Laboratory of Jilin Province for Zoonosis Prevention and Control, Changchun, China","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"School of Information Science and Technology, and Center of AI for Science, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5087471164"],"corresponding_institution_ids":["https://openalex.org/I184983240","https://openalex.org/I194450716","https://openalex.org/I4210088164","https://openalex.org/I4210092888"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.31476909,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"23","issue":"06","first_page":"2550020","last_page":"2550020"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.7793999910354614,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.7793999910354614,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.13300000131130219,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.03759999945759773,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.597599983215332},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5220000147819519},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4223000109195709},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4002000093460083},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.37940001487731934},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.35040000081062317},{"id":"https://openalex.org/keywords/personalization","display_name":"Personalization","score":0.3422999978065491},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.31869998574256897}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7329000234603882},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.597599983215332},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5418999791145325},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5220000147819519},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4223000109195709},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4002000093460083},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.391400009393692},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.37940001487731934},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.35040000081062317},{"id":"https://openalex.org/C183003079","wikidata":"https://www.wikidata.org/wiki/Q1000371","display_name":"Personalization","level":2,"score":0.3422999978065491},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.31869998574256897},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.3125},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.29010000824928284},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.2890999913215637},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.2806999981403351},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.2754000127315521},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.26919999718666077},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.2599000036716461},{"id":"https://openalex.org/C64894306","wikidata":"https://www.wikidata.org/wiki/Q849622","display_name":"Homologous chromosome","level":3,"score":0.2549000084400177},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.2515000104904175}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000914","descriptor_name":"Antibodies, Viral","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000914","descriptor_name":"Antibodies, Viral","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000914","descriptor_name":"Antibodies, Viral","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000914","descriptor_name":"Antibodies, Viral","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720025500209","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720025500209","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:41403223","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41403223","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1989639228","https://openalex.org/W1996581857","https://openalex.org/W2051210555","https://openalex.org/W2103083136","https://openalex.org/W2142678478","https://openalex.org/W2148495628","https://openalex.org/W2158266834","https://openalex.org/W2158714788","https://openalex.org/W2912640294","https://openalex.org/W3015438624","https://openalex.org/W3049166744","https://openalex.org/W3113774549","https://openalex.org/W3161032756","https://openalex.org/W3174714560","https://openalex.org/W4284886202","https://openalex.org/W4308432368","https://openalex.org/W4309506674","https://openalex.org/W4312187703","https://openalex.org/W4312198087","https://openalex.org/W4366998330","https://openalex.org/W4392633839"],"related_works":[],"abstract_inverted_index":{"The":[0,110,177],"emergence":[1],"of":[2,28,48,57,68,130],"SARS-CoV-2":[3,38,135],"has":[4],"highlighted":[5],"the":[6,41,44,55,128,163,166],"need":[7],"for":[8,18,97,101,156,184],"computational":[9],"methods":[10],"to":[11,23,33,103,121,188],"identify":[12,25],"neutralizing":[13,29,141,154],"antibodies.":[14,49],"Existing":[15],"sequence-based":[16],"tools":[17,144,149],"predicting":[19,153],"antigen-antibody":[20,69],"interactions":[21,164],"struggle":[22],"effectively":[24,161],"antibodies":[26,102,155],"capable":[27],"different":[30],"variants":[31],"due":[32],"high":[34,58],"sequence":[35,59],"similarity":[36,42,60],"among":[37,61],"strains":[39],"and":[40,86,99,106,117,147,170,186],"in":[43,152],"framework":[45,76,111],"regions":[46],"(FWRs)":[47],"To":[50,126],"address":[51],"this":[52],"challenge,":[53],"particularly":[54],"issue":[56],"homologous":[62,81,157],"antigens":[63,82,98,171],"that":[64],"impedes":[65],"accurate":[66],"prediction":[67,143],"interactions,":[70],"we":[71,132],"developed":[72],"a":[73,134,173],"deep":[74],"learning":[75],"named":[77],"PLMABFW.":[78],"It":[79,90],"differentiates":[80],"using":[83],"encoding":[84],"techniques":[85],"network":[87],"architecture":[88],"design.":[89],"employs":[91],"pre-trained":[92],"protein":[93],"language":[94],"models":[95],"ESM-2":[96],"AntiBERTy":[100],"encode":[104],"sequences":[105],"capture":[107],"additional":[108],"features.":[109],"also":[112],"incorporates":[113],"both":[114],"antigen":[115,123],"features":[116],"their":[118],"transposed":[119],"versions":[120],"enhance":[122],"information":[124],"capture.":[125],"validate":[127],"performance":[129],"PLMABFW,":[131],"collected":[133],"neutralization":[136],"dataset.":[137],"PLMABFW":[138],"outperformed":[139],"existing":[140],"antibody":[142],"(AbAgIntPre,":[145],"DeepAAI)":[146],"docking":[148],"(HDOCK,":[150],"LSTM-PHV)":[151],"antigens.":[158],"Furthermore,":[159],"it":[160],"learned":[162],"between":[165],"antibody's":[167],"CDR-H3":[168],"region":[169],"via":[172],"partial":[174],"masking":[175],"strategy.":[176],"model":[178],"code":[179],"is":[180],"available":[181],"on":[182],"GitHub":[183],"customization":[185],"adaptation":[187],"diverse":[189],"research":[190],"needs.":[191]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-11-20T00:00:00"}
