{"id":"https://openalex.org/W4398242002","doi":"https://doi.org/10.1142/s021972002471001x","title":"How much can ChatGPT really help computational biologists in programming?","display_name":"How much can ChatGPT really help computational biologists in programming?","publication_year":2024,"publication_date":"2024-04-01","ids":{"openalex":"https://openalex.org/W4398242002","doi":"https://doi.org/10.1142/s021972002471001x","pmid":"https://pubmed.ncbi.nlm.nih.gov/38779779"},"language":"en","primary_location":{"id":"doi:10.1142/s021972002471001x","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s021972002471001x","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033438760","display_name":"Chowdhury Rafeed Rahman","orcid":"https://orcid.org/0000-0001-5481-8025"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Chowdhury Rafeed Rahman","raw_affiliation_strings":["Computer Science Department, National University of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012381970","display_name":"Limsoon Wong","orcid":"https://orcid.org/0000-0003-1241-5441"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Limsoon Wong","raw_affiliation_strings":["School of Computing, National University of Singapore, 13 Computing Drive, Singapore 117417"],"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, 13 Computing Drive, Singapore 117417","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5033438760"],"corresponding_institution_ids":["https://openalex.org/I165932596"],"apc_list":null,"apc_paid":null,"fwci":0.2515,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.57719072,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"22","issue":"02","first_page":"2471001","last_page":"2471001"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.9099000096321106,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.9099000096321106,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9099000096321106,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12002","display_name":"Computability, Logic, AI Algorithms","score":0.9042999744415283,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.753307580947876},{"id":"https://openalex.org/keywords/code-refactoring","display_name":"Code refactoring","score":0.6897445321083069},{"id":"https://openalex.org/keywords/debugging","display_name":"Debugging","score":0.569497287273407},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.5556843876838684},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5240545272827148},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.5159231424331665},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4552451968193054},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.4376542568206787},{"id":"https://openalex.org/keywords/computational-thinking","display_name":"Computational thinking","score":0.4328484535217285},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4285699129104614},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.426168829202652},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38646605610847473},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.38209009170532227},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.1824132800102234}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.753307580947876},{"id":"https://openalex.org/C152752567","wikidata":"https://www.wikidata.org/wiki/Q116877","display_name":"Code refactoring","level":3,"score":0.6897445321083069},{"id":"https://openalex.org/C168065819","wikidata":"https://www.wikidata.org/wiki/Q845566","display_name":"Debugging","level":2,"score":0.569497287273407},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.5556843876838684},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5240545272827148},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5159231424331665},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4552451968193054},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.4376542568206787},{"id":"https://openalex.org/C2780368719","wikidata":"https://www.wikidata.org/wiki/Q5157342","display_name":"Computational thinking","level":2,"score":0.4328484535217285},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4285699129104614},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.426168829202652},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38646605610847473},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.38209009170532227},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.1824132800102234},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1142/s021972002471001x","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s021972002471001x","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:38779779","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38779779","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7900000214576721,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1987134040","https://openalex.org/W2069089843","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2110417468","https://openalex.org/W2114850508","https://openalex.org/W2124351063","https://openalex.org/W2138601221","https://openalex.org/W2145962650","https://openalex.org/W2146290346","https://openalex.org/W2156125289","https://openalex.org/W2158714788","https://openalex.org/W2158789637","https://openalex.org/W2161815151","https://openalex.org/W2399769480","https://openalex.org/W2804822363","https://openalex.org/W2867868648","https://openalex.org/W2952156265","https://openalex.org/W3003257820","https://openalex.org/W3043761819","https://openalex.org/W3049105619","https://openalex.org/W3131055609","https://openalex.org/W3186179742","https://openalex.org/W4212897670","https://openalex.org/W4213149192","https://openalex.org/W4285267822","https://openalex.org/W4311887664","https://openalex.org/W4384561376","https://openalex.org/W4385302156","https://openalex.org/W4385741486"],"related_works":["https://openalex.org/W4313549863","https://openalex.org/W194942058","https://openalex.org/W2991900792","https://openalex.org/W1985388819","https://openalex.org/W2088986462","https://openalex.org/W2907384944","https://openalex.org/W3205917186","https://openalex.org/W2500787716","https://openalex.org/W2805176976","https://openalex.org/W3194517161"],"abstract_inverted_index":{"ChatGPT,":[0],"a":[1,13],"recently":[2],"developed":[3],"product":[4],"by":[5,42],"openAI,":[6],"is":[7],"successfully":[8],"leaving":[9],"its":[10,28],"mark":[11],"as":[12,137],"multi-purpose":[14],"natural":[15],"language":[16],"based":[17],"chatbot.":[18],"In":[19],"this":[20,125,155],"paper,":[21],"we":[22,132],"are":[23],"more":[24,103,114],"interested":[25],"in":[26,30,78,130,154],"analyzing":[27,52],"potential":[29,70],"the":[31,69,79,149],"field":[32],"of":[33,39,76,92,116,151],"computational":[34,43,95,152],"biology.":[35],"A":[36],"major":[37],"share":[38],"work":[40],"done":[41],"biologists":[44,153],"these":[45],"days":[46],"involve":[47],"coding":[48,100,117],"up":[49],"bioinformatics":[50],"algorithms,":[51],"data,":[53],"creating":[54],"pipelining":[55,145],"scripts":[56],"and":[57,62,74,105,112,144],"even":[58],"machine":[59],"learning":[60],"modeling":[61],"feature":[63],"extraction.":[64],"This":[65],"paper":[66],"focuses":[67],"on":[68],"influence":[71],"(both":[72],"positive":[73],"negative)":[75],"ChatGPT":[77,147],"mentioned":[80],"aspects":[81],"with":[82,109],"illustrative":[83],"examples":[84],"from":[85,120,148],"different":[86],"perspectives.":[87],"Compared":[88],"to":[89,124],"other":[90],"fields":[91],"computer":[93],"science,":[94],"biology":[96],"has":[97],"(1)":[98],"less":[99],"resources,":[101],"(2)":[102],"sensitivity":[104],"bias":[106],"issues":[107,129],"(deals":[108],"medical":[110],"data),":[111],"(3)":[113],"necessity":[115],"assistance":[118],"(people":[119],"diverse":[121],"background":[122],"come":[123],"field).":[126],"Keeping":[127],"such":[128,136],"mind,":[131],"cover":[133],"use":[134],"cases":[135],"code":[138],"writing,":[139],"reviewing,":[140],"debugging,":[141],"converting,":[142],"refactoring,":[143],"using":[146],"perspective":[150],"paper.":[156]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2025-12-22T23:10:17.713674","created_date":"2025-10-10T00:00:00"}
