{"id":"https://openalex.org/W4391281764","doi":"https://doi.org/10.1142/s0219720024500021","title":"Analyzing omics data based on sample network","display_name":"Analyzing omics data based on sample network","publication_year":2024,"publication_date":"2024-01-27","ids":{"openalex":"https://openalex.org/W4391281764","doi":"https://doi.org/10.1142/s0219720024500021","pmid":"https://pubmed.ncbi.nlm.nih.gov/38567387"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720024500021","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1142/s0219720024500021","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020420255","display_name":"Meizhen Sheng","orcid":"https://orcid.org/0009-0003-6236-3405"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meizhen Sheng","raw_affiliation_strings":["School of Computer Science & Technology, Dalian University of Technology, No. 2 Linggong Road, Dalian, Liaoning Province 116024, P.\u00a0R.\u00a0China"],"raw_orcid":"https://orcid.org/0009-0003-6236-3405","affiliations":[{"raw_affiliation_string":"School of Computer Science & Technology, Dalian University of Technology, No. 2 Linggong Road, Dalian, Liaoning Province 116024, P.\u00a0R.\u00a0China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111702341","display_name":"Yanpeng Qi","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanpeng Qi","raw_affiliation_strings":["School of Computer Science & Technology, Dalian University of Technology, No. 2 Linggong Road, Dalian, Liaoning Province 116024, P.\u00a0R.\u00a0China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science & Technology, Dalian University of Technology, No. 2 Linggong Road, Dalian, Liaoning Province 116024, P.\u00a0R.\u00a0China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086240975","display_name":"Zhenbo Gao","orcid":"https://orcid.org/0009-0007-9303-2827"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenbo Gao","raw_affiliation_strings":["School of Computer Science & Technology, Dalian University of Technology, No. 2 Linggong Road, Dalian, Liaoning Province 116024, P.\u00a0R.\u00a0China"],"raw_orcid":"https://orcid.org/0009-0007-9303-2827","affiliations":[{"raw_affiliation_string":"School of Computer Science & Technology, Dalian University of Technology, No. 2 Linggong Road, Dalian, Liaoning Province 116024, P.\u00a0R.\u00a0China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058966302","display_name":"Xiaohui Lin","orcid":"https://orcid.org/0000-0002-7358-6706"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaohui Lin","raw_affiliation_strings":["School of Computer Science & Technology, Dalian University of Technology, No. 2 Linggong Road, Dalian, Liaoning Province 116024, P.\u00a0R.\u00a0China"],"raw_orcid":"https://orcid.org/0000-0002-7358-6706","affiliations":[{"raw_affiliation_string":"School of Computer Science & Technology, Dalian University of Technology, No. 2 Linggong Road, Dalian, Liaoning Province 116024, P.\u00a0R.\u00a0China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5058966302"],"corresponding_institution_ids":["https://openalex.org/I27357992"],"apc_list":null,"apc_paid":null,"fwci":0.211,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.51895804,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"22","issue":"01","first_page":"2450002","last_page":"2450002"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.662243127822876},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.6555789709091187},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6366220712661743},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.6305627226829529},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.6035528779029846},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5352652072906494},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.4811893105506897},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4207083582878113},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.41363582015037537},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37379080057144165},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.30254197120666504},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1842467486858368},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.07788687944412231}],"concepts":[{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.662243127822876},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.6555789709091187},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6366220712661743},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.6305627226829529},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.6035528779029846},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5352652072906494},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.4811893105506897},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4207083582878113},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.41363582015037537},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37379080057144165},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.30254197120666504},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1842467486858368},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.07788687944412231},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720024500021","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1142/s0219720024500021","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:38567387","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38567387","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1500895378","https://openalex.org/W1855299742","https://openalex.org/W1966985102","https://openalex.org/W1968214033","https://openalex.org/W1973033483","https://openalex.org/W1987219048","https://openalex.org/W2003027369","https://openalex.org/W2009405916","https://openalex.org/W2039767429","https://openalex.org/W2069473864","https://openalex.org/W2109363337","https://openalex.org/W2124035671","https://openalex.org/W2143426320","https://openalex.org/W2154053567","https://openalex.org/W2293018703","https://openalex.org/W2344681634","https://openalex.org/W2511712066","https://openalex.org/W2513583638","https://openalex.org/W2518331578","https://openalex.org/W2658952216","https://openalex.org/W2795688948","https://openalex.org/W2904064205","https://openalex.org/W2945976633","https://openalex.org/W2950942463","https://openalex.org/W2980012916","https://openalex.org/W3024830500","https://openalex.org/W3095896691","https://openalex.org/W3144599579","https://openalex.org/W3160801315","https://openalex.org/W4282913188","https://openalex.org/W4389140058"],"related_works":["https://openalex.org/W2086397253","https://openalex.org/W177137871","https://openalex.org/W4292302930","https://openalex.org/W4386960635","https://openalex.org/W2133122801","https://openalex.org/W600422426","https://openalex.org/W2594649246","https://openalex.org/W3184567430","https://openalex.org/W4386564352","https://openalex.org/W2952668426"],"abstract_inverted_index":{"Identifying":[0],"valuable":[1],"features":[2,106,181],"from":[3,32],"complex":[4],"omics":[5,33,138,175],"data":[6,139],"is":[7,38,59,171],"of":[8,56,65,118,164,167,188],"great":[9],"significance":[10],"for":[11,173],"disease":[12],"diagnosis":[13],"study.":[14],"This":[15],"paper":[16],"proposes":[17],"a":[18,74,77],"new":[19],"feature":[20,58,75],"selection":[21],"algorithm":[22],"based":[23,61],"on":[24,62,73,123],"sample":[25,36,43,67,70,169],"network":[26,37,71,170],"(FS-SN)":[27],"to":[28,41,82,108],"mine":[29],"important":[30],"information":[31],"data.":[34],"The":[35,69],"constructed":[39],"according":[40,107],"the":[42,47,53,57,63,66,87,95,100,109,116,149,165,168,184,192],"neighbor":[44],"relationship":[45],"at":[46],"molecular":[48],"(feature)":[49],"expression":[50],"level,":[51],"and":[52,91,132,155,186,190],"distinguishing":[54],"ability":[55,80],"evaluated":[60],"topology":[64,166],"network.":[68],"established":[72],"with":[76,127],"strong":[78],"discriminating":[79],"tends":[81],"have":[83],"many":[84],"edges":[85,93],"between":[86,94,112],"same":[88,101],"group":[89,97],"samples":[90],"few":[92],"different":[96],"samples.":[98],"At":[99],"time,":[102],"FS-SN":[103,145,161],"removes":[104],"redundant":[105],"gravitational":[110],"interaction":[111],"features.":[113],"To":[114],"show":[115,143],"validation":[117],"FS-SN,":[119],"it":[120,177],"was":[121],"compared":[122,150],"ten":[124],"public":[125],"datasets":[126],"ERGS,":[128],"mRMR,":[129],"ReliefF,":[130],"ATSD-DN,":[131],"INDEED":[133],"which":[134],"are":[135],"efficient":[136],"in":[137,152,157],"analysis.":[140],"Experimental":[141],"results":[142],"that":[144,182],"performed":[146],"better":[147],"than":[148],"methods":[151],"accuracy,":[153],"sensitivity":[154],"specificity":[156],"most":[158],"cases.":[159],"Hence,":[160],"making":[162],"use":[163],"effective":[172],"analyzing":[174],"data,":[176],"can":[178],"identify":[179],"key":[180],"reflect":[183],"occurrence":[185],"development":[187],"diseases,":[189],"reveal":[191],"underlying":[193],"biological":[194],"mechanism.":[195]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
