{"id":"https://openalex.org/W4386011783","doi":"https://doi.org/10.1142/s0219720023500208","title":"Multi-omics data analysis reveals the biological implications of alternative splicing events in lung adenocarcinoma","display_name":"Multi-omics data analysis reveals the biological implications of alternative splicing events in lung adenocarcinoma","publication_year":2023,"publication_date":"2023-08-01","ids":{"openalex":"https://openalex.org/W4386011783","doi":"https://doi.org/10.1142/s0219720023500208","pmid":"https://pubmed.ncbi.nlm.nih.gov/37694487"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720023500208","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1142/s0219720023500208","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042099636","display_name":"Fuyan Hu","orcid":"https://orcid.org/0000-0003-1817-7982"},"institutions":[{"id":"https://openalex.org/I196699116","display_name":"Wuhan University of Technology","ror":"https://ror.org/03fe7t173","country_code":"CN","type":"education","lineage":["https://openalex.org/I196699116"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fuyan Hu","raw_affiliation_strings":["Department of Statistics, School of Science, Wuhan University of Technology, 122 Luoshi Road, Wuhan, Hubei 430070, P. R. China"],"raw_orcid":"https://orcid.org/0000-0003-1817-7982","affiliations":[{"raw_affiliation_string":"Department of Statistics, School of Science, Wuhan University of Technology, 122 Luoshi Road, Wuhan, Hubei 430070, P. R. China","institution_ids":["https://openalex.org/I196699116"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091266170","display_name":"Bifeng Chen","orcid":"https://orcid.org/0000-0001-5482-1910"},"institutions":[{"id":"https://openalex.org/I196699116","display_name":"Wuhan University of Technology","ror":"https://ror.org/03fe7t173","country_code":"CN","type":"education","lineage":["https://openalex.org/I196699116"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bifeng Chen","raw_affiliation_strings":["Department of Biological Science and Technology, School of Chemistry Chemical Engineering and Life Sciences, Wuhan University of Technology Wuhan, Hubei, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Science and Technology, School of Chemistry Chemical Engineering and Life Sciences, Wuhan University of Technology Wuhan, Hubei, P. R. China","institution_ids":["https://openalex.org/I196699116"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100434915","display_name":"Qing Wang","orcid":"https://orcid.org/0009-0003-7328-8762"},"institutions":[{"id":"https://openalex.org/I43922553","display_name":"Wuhan University of Science and Technology","ror":"https://ror.org/00e4hrk88","country_code":"CN","type":"education","lineage":["https://openalex.org/I43922553"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qing Wang","raw_affiliation_strings":["Department of Traditional Chinese Medicine of Wuhan Puren Hospital, Affiliated Hospital of Wuhan University of Science and Technology, 1# Benxi Street, Qingshan District, Wuhan, Hubei, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Traditional Chinese Medicine of Wuhan Puren Hospital, Affiliated Hospital of Wuhan University of Science and Technology, 1# Benxi Street, Qingshan District, Wuhan, Hubei, P. R. China","institution_ids":["https://openalex.org/I43922553"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100619261","display_name":"Zhiyuan Yang","orcid":"https://orcid.org/0000-0003-2013-2281"},"institutions":[{"id":"https://openalex.org/I50760025","display_name":"Hangzhou Dianzi University","ror":"https://ror.org/0576gt767","country_code":"CN","type":"education","lineage":["https://openalex.org/I50760025"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiyuan Yang","raw_affiliation_strings":["School of Artificial Intelligence, Hangzhou Dianzi University, Hangzhou, Zhejiang, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Hangzhou Dianzi University, Hangzhou, Zhejiang, P. R. China","institution_ids":["https://openalex.org/I50760025"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103267723","display_name":"Man Chu","orcid":"https://orcid.org/0000-0002-9262-7550"},"institutions":[{"id":"https://openalex.org/I4210136679","display_name":"Affiliated Hospital of Shaanxi University of Chinese Medicine","ror":"https://ror.org/041v5th48","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210136679"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Man Chu","raw_affiliation_strings":["The Affiliated Hospital of Shaanxi University of Chinese Medicine, Xianyang, Shaanxi 712046, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Affiliated Hospital of Shaanxi University of Chinese Medicine, Xianyang, Shaanxi 712046, P. R. China","institution_ids":["https://openalex.org/I4210136679"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.27479981,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"21","issue":"04","first_page":"2350020","last_page":"2350020"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7408655881881714},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.7177769541740417},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.6088323593139648},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.518057107925415},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.5110245943069458},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.50855553150177},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.45929187536239624},{"id":"https://openalex.org/keywords/adenocarcinoma","display_name":"Adenocarcinoma","score":0.43201401829719543},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.42079365253448486},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4032783508300781},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.34099140763282776},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.33298322558403015},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1864660084247589},{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.15348678827285767}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7408655881881714},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.7177769541740417},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.6088323593139648},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.518057107925415},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.5110245943069458},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.50855553150177},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.45929187536239624},{"id":"https://openalex.org/C2781182431","wikidata":"https://www.wikidata.org/wiki/Q356033","display_name":"Adenocarcinoma","level":3,"score":0.43201401829719543},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.42079365253448486},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4032783508300781},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.34099140763282776},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.33298322558403015},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1864660084247589},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.15348678827285767}],"mesh":[{"descriptor_ui":"D000077192","descriptor_name":"Adenocarcinoma of Lung","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000077192","descriptor_name":"Adenocarcinoma of Lung","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000077192","descriptor_name":"Adenocarcinoma of Lung","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019869","descriptor_name":"Phosphatidylinositol 3-Kinases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019869","descriptor_name":"Phosphatidylinositol 3-Kinases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019869","descriptor_name":"Phosphatidylinositol 3-Kinases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720023500208","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1142/s0219720023500208","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:37694487","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37694487","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6800000071525574,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G7607685029","display_name":"\u57fa\u4e8e\u591a\u7ec4\u5b66\u6570\u636e\u7684\u65e0\u4e49\u4ecb\u5bfc\u7684mRNA\u964d\u89e3\u673a\u5236\u5728\u80be\u764c\u4e2d\u7684\u4f5c\u7528\u7814\u7a76","funder_award_id":"61903285","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7902002811","display_name":null,"funder_award_id":"WUT: 2021III062JC","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G809160420","display_name":null,"funder_award_id":"2021JQ-727","funder_id":"https://openalex.org/F4320324173","funder_display_name":"Natural Science Foundation of Shaanxi Province"},{"id":"https://openalex.org/G8137715518","display_name":null,"funder_award_id":"WUT: 2020IA005","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G851652052","display_name":null,"funder_award_id":"WUT: 2020IVB031","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8646749045","display_name":null,"funder_award_id":"61903107","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8945687079","display_name":null,"funder_award_id":"WUT: 2020IB003","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324173","display_name":"Natural Science Foundation of Shaanxi Province","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W32502192","https://openalex.org/W76995436","https://openalex.org/W324535036","https://openalex.org/W1556285913","https://openalex.org/W1883773314","https://openalex.org/W1986604594","https://openalex.org/W2009258895","https://openalex.org/W2009755744","https://openalex.org/W2028348567","https://openalex.org/W2029583475","https://openalex.org/W2036610074","https://openalex.org/W2045709376","https://openalex.org/W2053274070","https://openalex.org/W2077532831","https://openalex.org/W2116220051","https://openalex.org/W2122358139","https://openalex.org/W2133465414","https://openalex.org/W2158217645","https://openalex.org/W2168704991","https://openalex.org/W2179438025","https://openalex.org/W2296849958","https://openalex.org/W2346025119","https://openalex.org/W2476165008","https://openalex.org/W2502573483","https://openalex.org/W2508069933","https://openalex.org/W2561372580","https://openalex.org/W2587125658","https://openalex.org/W2613756454","https://openalex.org/W2741879909","https://openalex.org/W2749613778","https://openalex.org/W2760366406","https://openalex.org/W2768965084","https://openalex.org/W2841539985","https://openalex.org/W2900563804","https://openalex.org/W2900569176","https://openalex.org/W2947457926","https://openalex.org/W2971720734","https://openalex.org/W2982051641","https://openalex.org/W2995651451","https://openalex.org/W3000012169","https://openalex.org/W3003807413","https://openalex.org/W3010541130","https://openalex.org/W3018590998","https://openalex.org/W3026308017","https://openalex.org/W3034054187","https://openalex.org/W3034617180","https://openalex.org/W3081126821","https://openalex.org/W3094938310","https://openalex.org/W3095471767","https://openalex.org/W3101974256","https://openalex.org/W3117444615","https://openalex.org/W3128646645","https://openalex.org/W3132948359","https://openalex.org/W3157711773","https://openalex.org/W3172061523"],"related_works":["https://openalex.org/W2898448758","https://openalex.org/W2802827720","https://openalex.org/W2321791250","https://openalex.org/W4213427798","https://openalex.org/W2023199111","https://openalex.org/W2564462691","https://openalex.org/W2065030615","https://openalex.org/W2885403345","https://openalex.org/W2052498125","https://openalex.org/W4387768639"],"abstract_inverted_index":{"Cancer":[0],"is":[1],"characterized":[2],"by":[3],"the":[4,11,27,34,146],"dysregulation":[5],"of":[6,15,37,81,148,157],"alternative":[7,52],"splicing":[8,53,100],"(AS).":[9],"However,":[10],"comprehensive":[12],"regulatory":[13,97],"mechanisms":[14],"AS":[16,28,44,149],"in":[17,30,46],"lung":[18],"adenocarcinoma":[19],"(LUAD)":[20],"are":[21],"poorly":[22],"understood.":[23],"Here,":[24],"we":[25],"displayed":[26],"landscape":[29],"LUAD":[31],"based":[32],"on":[33],"integrated":[35],"analyses":[36],"LUAD's":[38],"multi-omics":[39],"data.":[40],"We":[41,93],"identified":[42],"13,995":[43],"events":[45,54],"6309":[47],"genes":[48],"as":[49,69],"differentially":[50],"expressed":[51],"(DEASEs)":[55],"mainly":[56],"covering":[57],"protein-coding":[58],"genes.":[59],"These":[60],"DEASEs":[61,114],"were":[62,115,131],"strongly":[63],"linked":[64],"to":[65,117],"\"cancer":[66],"hallmarks\",":[67],"such":[68],"apoptosis,":[70],"DNA":[71,128],"repair,":[72],"cell":[73,75],"cycle,":[74],"proliferation,":[76],"angiogenesis,":[77],"immune":[78],"response,":[79],"generation":[80],"precursor":[82],"metabolites":[83],"and":[84,89,103,150],"energy,":[85],"p53":[86],"signaling":[87,91],"pathway":[88],"PI3K-AKT":[90],"pathway.":[92],"further":[94],"built":[95],"a":[96],"network":[98],"connecting":[99],"factors":[101],"(SFs)":[102],"DEASEs.":[104,135],"In":[105,136],"addition,":[106],"RNA-binding":[107],"protein":[108],"(RBP)":[109],"mutations":[110],"that":[111,127],"can":[112,140],"affect":[113],"investigated":[116],"find":[118],"some":[119],"potential":[120],"cancer":[121],"drivers.":[122],"Further":[123],"association":[124],"analysis":[125],"demonstrated":[126],"methylation":[129],"levels":[130],"highly":[132],"correlated":[133],"with":[134],"summary,":[137],"our":[138],"results":[139],"bring":[141],"new":[142],"insight":[143],"into":[144],"understanding":[145],"mechanism":[147],"provide":[151],"novel":[152],"biomarkers":[153],"for":[154],"personalized":[155],"medicine":[156],"LUAD.":[158]},"counts_by_year":[],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2023-08-21T00:00:00"}
