{"id":"https://openalex.org/W4376117542","doi":"https://doi.org/10.1142/s0219720023500129","title":"Identification of a seven autophagy-related gene pairs signature for the diagnosis of colorectal cancer using the RankComp algorithm","display_name":"Identification of a seven autophagy-related gene pairs signature for the diagnosis of colorectal cancer using the RankComp algorithm","publication_year":2023,"publication_date":"2023-05-10","ids":{"openalex":"https://openalex.org/W4376117542","doi":"https://doi.org/10.1142/s0219720023500129","pmid":"https://pubmed.ncbi.nlm.nih.gov/37325865"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720023500129","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720023500129","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113721802","display_name":"Qishi Song","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210159865","display_name":"Xiangya Hospital Central South University","ror":"https://ror.org/05c1yfj14","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159865"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qi-Shi Song","raw_affiliation_strings":["Department of Oncology, Xiangya Hospital of Central South University, Changsha, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Oncology, Xiangya Hospital of Central South University, Changsha, P. R. China","institution_ids":["https://openalex.org/I4210159865","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100691104","display_name":"Haijun Wu","orcid":"https://orcid.org/0000-0001-7354-7101"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210159865","display_name":"Xiangya Hospital Central South University","ror":"https://ror.org/05c1yfj14","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159865"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hai-Jun Wu","raw_affiliation_strings":["Department of Oncology, Xiangya Hospital of Central South University, Changsha, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Oncology, Xiangya Hospital of Central South University, Changsha, P. R. China","institution_ids":["https://openalex.org/I4210159865","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100326339","display_name":"Qian Lin","orcid":"https://orcid.org/0000-0001-8980-2269"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210159865","display_name":"Xiangya Hospital Central South University","ror":"https://ror.org/05c1yfj14","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159865"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qian Lin","raw_affiliation_strings":["Department of Oncology, Xiangya Hospital of Central South University, Changsha, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Oncology, Xiangya Hospital of Central South University, Changsha, P. R. China","institution_ids":["https://openalex.org/I4210159865","https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102511722","display_name":"Yu-Kai Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210159865","display_name":"Xiangya Hospital Central South University","ror":"https://ror.org/05c1yfj14","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159865"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu-Kai Tang","raw_affiliation_strings":["Department of Oncology, Xiangya Hospital of Central South University, Changsha, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Oncology, Xiangya Hospital of Central South University, Changsha, P. R. China","institution_ids":["https://openalex.org/I4210159865","https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100691104"],"corresponding_institution_ids":["https://openalex.org/I139660479","https://openalex.org/I4210159865"],"apc_list":null,"apc_paid":null,"fwci":0.2312,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.68607566,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"21","issue":"03","first_page":"2350012","last_page":"2350012"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"Colorectal cancer","score":0.8205267786979675},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6055929064750671},{"id":"https://openalex.org/keywords/signature","display_name":"Signature (topology)","score":0.5476547479629517},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.5440865755081177},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5337548851966858},{"id":"https://openalex.org/keywords/gene-signature","display_name":"Gene signature","score":0.5308196544647217},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4469442069530487},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4203539490699768},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4174576997756958},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.404660701751709},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3780645728111267},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.33191758394241333},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2546304166316986},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19109967350959778}],"concepts":[{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.8205267786979675},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6055929064750671},{"id":"https://openalex.org/C2779696439","wikidata":"https://www.wikidata.org/wiki/Q7512811","display_name":"Signature (topology)","level":2,"score":0.5476547479629517},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.5440865755081177},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5337548851966858},{"id":"https://openalex.org/C2779733811","wikidata":"https://www.wikidata.org/wiki/Q5531562","display_name":"Gene signature","level":4,"score":0.5308196544647217},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4469442069530487},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4203539490699768},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4174576997756958},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.404660701751709},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3780645728111267},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33191758394241333},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2546304166316986},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19109967350959778},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720023500129","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720023500129","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:37325865","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37325865","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7699999809265137}],"awards":[{"id":"https://openalex.org/G1772675212","display_name":null,"funder_award_id":"2020JJ4915","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"}],"funders":[{"id":"https://openalex.org/F4320322843","display_name":"Natural Science Foundation of\u00a0Hunan Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1653244371","https://openalex.org/W2007072354","https://openalex.org/W2007615926","https://openalex.org/W2020541351","https://openalex.org/W2025364264","https://openalex.org/W2048359072","https://openalex.org/W2080076824","https://openalex.org/W2096065464","https://openalex.org/W2096192437","https://openalex.org/W2097554668","https://openalex.org/W2106489008","https://openalex.org/W2107665951","https://openalex.org/W2115003883","https://openalex.org/W2115684345","https://openalex.org/W2116343100","https://openalex.org/W2124381835","https://openalex.org/W2126588279","https://openalex.org/W2131371081","https://openalex.org/W2142295792","https://openalex.org/W2146512944","https://openalex.org/W2167539263","https://openalex.org/W2168323176","https://openalex.org/W2236134270","https://openalex.org/W2502241735","https://openalex.org/W2520649252","https://openalex.org/W2770214586","https://openalex.org/W2791369103","https://openalex.org/W2795309980","https://openalex.org/W2900044275","https://openalex.org/W2928665623","https://openalex.org/W2932479432","https://openalex.org/W2946992647","https://openalex.org/W2982663458","https://openalex.org/W3015136391","https://openalex.org/W3019485927","https://openalex.org/W3021995864","https://openalex.org/W3087155072","https://openalex.org/W3107548823","https://openalex.org/W3127560017","https://openalex.org/W3137088177","https://openalex.org/W3137935884","https://openalex.org/W3138703087","https://openalex.org/W3213690898","https://openalex.org/W4214496618","https://openalex.org/W4280599181","https://openalex.org/W4294216483","https://openalex.org/W4294935231"],"related_works":["https://openalex.org/W2041540252","https://openalex.org/W2415545834","https://openalex.org/W1547158732","https://openalex.org/W3203113381","https://openalex.org/W2366558827","https://openalex.org/W170658859","https://openalex.org/W4232333928","https://openalex.org/W4233699124","https://openalex.org/W1594655861","https://openalex.org/W3215896839"],"abstract_inverted_index":{"Based":[0],"on":[1,56,93],"the":[2,22],"colorectal":[3,26,63,102,115],"cancer":[4,17,27,64,103,116],"microarray":[5],"sets":[6,79],"gene":[7,44,58,95],"expression":[8,49],"data":[9],"series":[10],"(GSE)":[11],"GSE10972":[12],"and":[13,18,28,36,80,89],"GSE74602":[14],"in":[15,25,76,82,105],"colon":[16],"222":[19],"autophagy-related":[20,42],"genes,":[21],"differential":[23],"signature":[24,38],"paracancerous":[29],"tissues":[30],"was":[31,52],"analyzed":[32],"by":[33],"RankComp":[34],"algorithm,":[35],"a":[37,111],"consisting":[39],"of":[40,74,101,113],"seven":[41,106],"reversal":[43],"pairs":[45,59,96],"with":[46,70],"stable":[47],"relative":[48],"orderings":[50],"(REOs)":[51],"obtained.":[53],"Scoring":[54,91],"based":[55,92],"these":[57,94],"could":[60],"significantly":[61],"distinguish":[62],"samples":[65,104],"from":[66],"adjacent":[67],"noncancerous":[68],"samples,":[69],"an":[71],"average":[72],"accuracy":[73],"97.5%":[75],"two":[77],"training":[78],"90.25%":[81],"four":[83],"independent":[84,108],"validation":[85],"GSE21510,":[86],"GSE37182,":[87],"GSE33126,":[88],"GSE18105.":[90],"also":[97],"accurately":[98],"identifies":[99],"99.85%":[100],"other":[107],"datasets":[109],"containing":[110],"total":[112],"1406":[114],"samples.":[117]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
