{"id":"https://openalex.org/W2956912424","doi":"https://doi.org/10.1142/s0219720019500306","title":"Graph kernels combined with the neural network on protein classification","display_name":"Graph kernels combined with the neural network on protein classification","publication_year":2019,"publication_date":"2019-07-09","ids":{"openalex":"https://openalex.org/W2956912424","doi":"https://doi.org/10.1142/s0219720019500306","mag":"2956912424","pmid":"https://pubmed.ncbi.nlm.nih.gov/31856667"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720019500306","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720019500306","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110259098","display_name":"Jiang Qiang-rong","orcid":null},"institutions":[{"id":"https://openalex.org/I37796252","display_name":"Beijing University of Technology","ror":"https://ror.org/037b1pp87","country_code":"CN","type":"education","lineage":["https://openalex.org/I37796252"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jiang Qiangrong","raw_affiliation_strings":["Department of Computer Science, Beijing University of Technology, Beijing, P.\u00a0R.\u00a0China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Beijing University of Technology, Beijing, P.\u00a0R.\u00a0China","institution_ids":["https://openalex.org/I37796252"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057484116","display_name":"Guang Qiu","orcid":"https://orcid.org/0000-0002-4669-6328"},"institutions":[{"id":"https://openalex.org/I37796252","display_name":"Beijing University of Technology","ror":"https://ror.org/037b1pp87","country_code":"CN","type":"education","lineage":["https://openalex.org/I37796252"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiu guang","raw_affiliation_strings":["Department of Computer Science, Beijing University of Technology, Beijing, P.\u00a0R.\u00a0China"],"raw_orcid":"https://orcid.org/0000-0002-4669-6328","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Beijing University of Technology, Beijing, P.\u00a0R.\u00a0China","institution_ids":["https://openalex.org/I37796252"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5110259098"],"corresponding_institution_ids":["https://openalex.org/I37796252"],"apc_list":null,"apc_paid":null,"fwci":0.3419,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.59364773,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"17","issue":"05","first_page":"1950030","last_page":"1950030"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/graph-kernel","display_name":"Graph kernel","score":0.6500043869018555},{"id":"https://openalex.org/keywords/adjacency-matrix","display_name":"Adjacency matrix","score":0.600701093673706},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.5452253818511963},{"id":"https://openalex.org/keywords/vertex","display_name":"Vertex (graph theory)","score":0.47122275829315186},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.44735562801361084},{"id":"https://openalex.org/keywords/polynomial-kernel","display_name":"Polynomial kernel","score":0.4408014118671417},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4330797791481018},{"id":"https://openalex.org/keywords/tree-kernel","display_name":"Tree kernel","score":0.42577800154685974},{"id":"https://openalex.org/keywords/radial-basis-function-kernel","display_name":"Radial basis function kernel","score":0.4234820306301117},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4104354679584503},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3999631404876709},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39325621724128723},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.3906435966491699},{"id":"https://openalex.org/keywords/kernel-method","display_name":"Kernel method","score":0.3557587265968323},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.2086520493030548}],"concepts":[{"id":"https://openalex.org/C100595998","wikidata":"https://www.wikidata.org/wiki/Q11731931","display_name":"Graph kernel","level":5,"score":0.6500043869018555},{"id":"https://openalex.org/C180356752","wikidata":"https://www.wikidata.org/wiki/Q727035","display_name":"Adjacency matrix","level":3,"score":0.600701093673706},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.5452253818511963},{"id":"https://openalex.org/C80899671","wikidata":"https://www.wikidata.org/wiki/Q1304193","display_name":"Vertex (graph theory)","level":3,"score":0.47122275829315186},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.44735562801361084},{"id":"https://openalex.org/C160446489","wikidata":"https://www.wikidata.org/wiki/Q7226642","display_name":"Polynomial kernel","level":4,"score":0.4408014118671417},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4330797791481018},{"id":"https://openalex.org/C140417398","wikidata":"https://www.wikidata.org/wiki/Q16933942","display_name":"Tree kernel","level":5,"score":0.42577800154685974},{"id":"https://openalex.org/C75866337","wikidata":"https://www.wikidata.org/wiki/Q7280263","display_name":"Radial basis function kernel","level":4,"score":0.4234820306301117},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4104354679584503},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3999631404876709},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39325621724128723},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.3906435966491699},{"id":"https://openalex.org/C122280245","wikidata":"https://www.wikidata.org/wiki/Q620622","display_name":"Kernel method","level":3,"score":0.3557587265968323},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.2086520493030548}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720019500306","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720019500306","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:31856667","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31856667","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6299999952316284,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W598858589","https://openalex.org/W1482568066","https://openalex.org/W1494484168","https://openalex.org/W1669094309","https://openalex.org/W1835509607","https://openalex.org/W1879085217","https://openalex.org/W1973848216","https://openalex.org/W2024038403","https://openalex.org/W2030339748","https://openalex.org/W2034618876","https://openalex.org/W2092750499","https://openalex.org/W2099438806","https://openalex.org/W2103903366","https://openalex.org/W2106062446","https://openalex.org/W2136345497","https://openalex.org/W2137476097","https://openalex.org/W2142498761","https://openalex.org/W2176839263","https://openalex.org/W2277993113","https://openalex.org/W2307935645","https://openalex.org/W2407661988","https://openalex.org/W2570487837","https://openalex.org/W2571299862","https://openalex.org/W2610822161","https://openalex.org/W2747014888","https://openalex.org/W3144386677"],"related_works":["https://openalex.org/W3013206934","https://openalex.org/W2574115973","https://openalex.org/W3100948281","https://openalex.org/W2130792056","https://openalex.org/W2096302783","https://openalex.org/W1590832708","https://openalex.org/W1535136526","https://openalex.org/W2147750455","https://openalex.org/W1983263273","https://openalex.org/W4311138679"],"abstract_inverted_index":{"At":[0],"present,":[1],"most":[2,80],"of":[3,16,28,56,63,70,84],"the":[4,22,26,31,53,60,64,67,79,91,95,99,104,109],"researches":[5],"on":[6,11,50],"protein":[7],"classification":[8],"are":[9],"based":[10,49],"graph":[12,17,41,65],"kernels.":[13],"The":[14],"essence":[15],"kernels":[18],"is":[19,58,106],"to":[20],"extract":[21],"substructure":[23],"and":[24,73,98],"use":[25],"similarity":[27,45],"substructures":[29],"as":[30,66],"kernel":[32,42,46,75,93],"values.":[33],"In":[34,87],"this":[35],"paper,":[36],"we":[37,89],"propose":[38],"a":[39],"novel":[40,92],"named":[43],"vertex-edge":[44],"(VES":[47],"kernel)":[48],"mixed":[51],"matrix,":[52],"innovation":[54],"point":[55],"which":[57],"taking":[59],"adjacency":[61],"matrix":[62],"sample":[68],"vector":[69],"each":[71],"vertex":[72,82],"calculating":[74],"values":[76],"by":[77],"finding":[78],"similar":[81],"pair":[83],"two":[85],"graphs.":[86],"addition,":[88],"combine":[90],"with":[94],"neural":[96],"network":[97],"experimental":[100],"results":[101],"show":[102],"that":[103],"combination":[105],"better":[107],"than":[108],"existing":[110],"advanced":[111],"methods.":[112]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-30T06:05:26.967640","created_date":"2025-10-10T00:00:00"}
