{"id":"https://openalex.org/W2891610502","doi":"https://doi.org/10.1142/s0219720018500245","title":"Motif discovery in biological network using expansion tree","display_name":"Motif discovery in biological network using expansion tree","publication_year":2018,"publication_date":"2018-09-20","ids":{"openalex":"https://openalex.org/W2891610502","doi":"https://doi.org/10.1142/s0219720018500245","mag":"2891610502","pmid":"https://pubmed.ncbi.nlm.nih.gov/30415600"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720018500245","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720018500245","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016056769","display_name":"Sabyasachi Patra","orcid":"https://orcid.org/0000-0001-9846-4804"},"institutions":[{"id":"https://openalex.org/I4210097016","display_name":"International Institute of Information Technology","ror":"https://ror.org/00qryer39","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097016"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Sabyasachi Patra","raw_affiliation_strings":["Bioinformatics Lab (DST-FIST Sponsored), Computer Science & Engineering Department, IIIT Bhubaneswar, Bhubaneswar, Odisha, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Lab (DST-FIST Sponsored), Computer Science & Engineering Department, IIIT Bhubaneswar, Bhubaneswar, Odisha, India","institution_ids":["https://openalex.org/I4210097016"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107063879","display_name":"Anjali Mohapatra","orcid":null},"institutions":[{"id":"https://openalex.org/I4210097016","display_name":"International Institute of Information Technology","ror":"https://ror.org/00qryer39","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097016"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Anjali Mohapatra","raw_affiliation_strings":["Bioinformatics Lab (DST-FIST Sponsored), Computer Science & Engineering Department, IIIT Bhubaneswar, Bhubaneswar, Odisha, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Lab (DST-FIST Sponsored), Computer Science & Engineering Department, IIIT Bhubaneswar, Bhubaneswar, Odisha, India","institution_ids":["https://openalex.org/I4210097016"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5016056769"],"corresponding_institution_ids":["https://openalex.org/I4210097016"],"apc_list":null,"apc_paid":null,"fwci":0.6516,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.68813918,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"16","issue":"06","first_page":"1850024","last_page":"1850024"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9700000286102295,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.5623828172683716},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4480750560760498},{"id":"https://openalex.org/keywords/network-motif","display_name":"Network motif","score":0.44657155871391296},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.431304395198822},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.39869701862335205},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34158915281295776},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3101801574230194}],"concepts":[{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.5623828172683716},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4480750560760498},{"id":"https://openalex.org/C60723933","wikidata":"https://www.wikidata.org/wiki/Q7001080","display_name":"Network motif","level":3,"score":0.44657155871391296},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.431304395198822},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.39869701862335205},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34158915281295776},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3101801574230194},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720018500245","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720018500245","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:30415600","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30415600","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1507763859","https://openalex.org/W1981383465","https://openalex.org/W1995907191","https://openalex.org/W2004559608","https://openalex.org/W2011039300","https://openalex.org/W2031869443","https://openalex.org/W2035729479","https://openalex.org/W2037442572","https://openalex.org/W2068308602","https://openalex.org/W2105302963","https://openalex.org/W2112262143","https://openalex.org/W2144636447","https://openalex.org/W2153624566","https://openalex.org/W2161917555","https://openalex.org/W2528717069"],"related_works":["https://openalex.org/W3079957389","https://openalex.org/W2796517744","https://openalex.org/W3113308218","https://openalex.org/W2807926763","https://openalex.org/W2951915565","https://openalex.org/W15348386","https://openalex.org/W4205962317","https://openalex.org/W2090574217","https://openalex.org/W3119507950","https://openalex.org/W2143557297"],"abstract_inverted_index":{",":[0],"respectively.":[1],"The":[2,18],"proposed":[3,23],"algorithm":[4,24],"has":[5],"been":[6],"tested":[7],"on":[8],"Protein-Protein":[9],"Interaction":[10],"(PPI)":[11],"network":[12,30],"obtained":[13],"from":[14],"the":[15,22,28],"MINT":[16],"database.":[17],"computational":[19],"efficiency":[20],"of":[21,27],"outperforms":[25],"most":[26],"existing":[29],"motif":[31],"discovery":[32],"algorithms.":[33]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}