{"id":"https://openalex.org/W2768528779","doi":"https://doi.org/10.1142/s0219720018500142","title":"Training host-pathogen protein\u2013protein interaction predictors","display_name":"Training host-pathogen protein\u2013protein interaction predictors","publication_year":2018,"publication_date":"2018-05-30","ids":{"openalex":"https://openalex.org/W2768528779","doi":"https://doi.org/10.1142/s0219720018500142","mag":"2768528779","pmid":"https://pubmed.ncbi.nlm.nih.gov/30060698"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720018500142","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720018500142","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1711.07886","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Abdul Hannan Basit","orcid":null},"institutions":[{"id":"https://openalex.org/I134276161","display_name":"Pakistan Institute of Engineering and Applied Sciences","ror":"https://ror.org/04d4mbk19","country_code":"PK","type":"education","lineage":["https://openalex.org/I134276161"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Abdul Hannan Basit","raw_affiliation_strings":["Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan","Department of Electrical Engineering, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan","institution_ids":["https://openalex.org/I134276161"]},{"raw_affiliation_string":"Department of Electrical Engineering, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan","institution_ids":["https://openalex.org/I134276161"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wajid Arshad Abbasi","orcid":null},"institutions":[{"id":"https://openalex.org/I134276161","display_name":"Pakistan Institute of Engineering and Applied Sciences","ror":"https://ror.org/04d4mbk19","country_code":"PK","type":"education","lineage":["https://openalex.org/I134276161"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Wajid Arshad Abbasi","raw_affiliation_strings":["Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan","institution_ids":["https://openalex.org/I134276161"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Amina Asif","orcid":null},"institutions":[{"id":"https://openalex.org/I134276161","display_name":"Pakistan Institute of Engineering and Applied Sciences","ror":"https://ror.org/04d4mbk19","country_code":"PK","type":"education","lineage":["https://openalex.org/I134276161"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Amina Asif","raw_affiliation_strings":["Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan","institution_ids":["https://openalex.org/I134276161"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Sadaf Gull","orcid":null},"institutions":[{"id":"https://openalex.org/I134276161","display_name":"Pakistan Institute of Engineering and Applied Sciences","ror":"https://ror.org/04d4mbk19","country_code":"PK","type":"education","lineage":["https://openalex.org/I134276161"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Sadaf Gull","raw_affiliation_strings":["Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan","institution_ids":["https://openalex.org/I134276161"]}]},{"author_position":"last","author":{"id":null,"display_name":"Fayyaz Ul Amir Afsar Minhas","orcid":"https://orcid.org/0000-0001-9129-1189"},"institutions":[{"id":"https://openalex.org/I134276161","display_name":"Pakistan Institute of Engineering and Applied Sciences","ror":"https://ror.org/04d4mbk19","country_code":"PK","type":"education","lineage":["https://openalex.org/I134276161"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Fayyaz Ul Amir Afsar Minhas","raw_affiliation_strings":["Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan"],"raw_orcid":"https://orcid.org/0000-0001-9129-1189","affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan","institution_ids":["https://openalex.org/I134276161"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I134276161"],"apc_list":null,"apc_paid":null,"fwci":1.3533,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.80302354,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"16","issue":"04","first_page":"1850014","last_page":"1850014"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.39329999685287476,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.39329999685287476,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.38109999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.11309999972581863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/position","display_name":"Position (finance)","score":0.5133000016212463},{"id":"https://openalex.org/keywords/tubercle","display_name":"Tubercle","score":0.40939998626708984},{"id":"https://openalex.org/keywords/latin-americans","display_name":"Latin Americans","score":0.32850000262260437},{"id":"https://openalex.org/keywords/syntactic-structure","display_name":"Syntactic structure","score":0.2558000087738037}],"concepts":[{"id":"https://openalex.org/C198082294","wikidata":"https://www.wikidata.org/wiki/Q3399648","display_name":"Position (finance)","level":2,"score":0.5133000016212463},{"id":"https://openalex.org/C162884822","wikidata":"https://www.wikidata.org/wiki/Q469660","display_name":"Tubercle","level":4,"score":0.40939998626708984},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36500000953674316},{"id":"https://openalex.org/C158886217","wikidata":"https://www.wikidata.org/wiki/Q16799549","display_name":"Latin Americans","level":2,"score":0.32850000262260437},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.3181000053882599},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.3158999979496002},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.29600000381469727},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.28189998865127563},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2721000015735626},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.2632000148296356},{"id":"https://openalex.org/C2986991398","wikidata":"https://www.wikidata.org/wiki/Q37437","display_name":"Syntactic structure","level":3,"score":0.2558000087738037},{"id":"https://openalex.org/C2984360167","wikidata":"https://www.wikidata.org/wiki/Q63258245","display_name":"Surface structure","level":2,"score":0.2538999915122986}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011897","descriptor_name":"Random Allocation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011897","descriptor_name":"Random Allocation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011897","descriptor_name":"Random Allocation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050794","descriptor_name":"STAT1 Transcription Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050794","descriptor_name":"STAT1 Transcription Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050794","descriptor_name":"STAT1 Transcription Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050795","descriptor_name":"STAT2 Transcription Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050795","descriptor_name":"STAT2 Transcription Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050795","descriptor_name":"STAT2 Transcription Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1142/s0219720018500142","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720018500142","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:30060698","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30060698","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null},{"id":"pmh:oai:wrap.warwick.ac.uk:129166","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400665","display_name":"Warwick Research Archive Portal (University of Warwick)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39555362","host_organization_name":"University of Warwick","host_organization_lineage":["https://openalex.org/I39555362"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:arXiv.org:1711.07886","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1711.07886","pdf_url":"https://arxiv.org/pdf/1711.07886","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1711.07886","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1711.07886","pdf_url":"https://arxiv.org/pdf/1711.07886","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2828480155","display_name":null,"funder_award_id":"NRPU Project 6085","funder_id":"https://openalex.org/F4320322799","funder_display_name":"Higher Education Commission, Pakistan"},{"id":"https://openalex.org/G2977001732","display_name":null,"funder_award_id":"213-58990-2PS2-046","funder_id":"https://openalex.org/F4320326275","funder_display_name":"Higher Education Commision, Pakistan"},{"id":"https://openalex.org/G5229826667","display_name":null,"funder_award_id":"315-12753-2EG3-197","funder_id":"https://openalex.org/F4320322799","funder_display_name":"Higher Education Commission, Pakistan"}],"funders":[{"id":"https://openalex.org/F4320316679","display_name":"Pakistan Institute of Engineering and Applied Sciences","ror":"https://ror.org/04d4mbk19"},{"id":"https://openalex.org/F4320322799","display_name":"Higher Education Commission, Pakistan","ror":"https://ror.org/038y3sz68"},{"id":"https://openalex.org/F4320326275","display_name":"Higher Education Commision, Pakistan","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W13034104","https://openalex.org/W113156574","https://openalex.org/W1678356000","https://openalex.org/W1966164449","https://openalex.org/W1967572918","https://openalex.org/W1968120338","https://openalex.org/W1970459535","https://openalex.org/W1982267716","https://openalex.org/W2025076726","https://openalex.org/W2035699033","https://openalex.org/W2047990563","https://openalex.org/W2051874642","https://openalex.org/W2069531699","https://openalex.org/W2079277579","https://openalex.org/W2109872885","https://openalex.org/W2116988471","https://openalex.org/W2118601386","https://openalex.org/W2128900650","https://openalex.org/W2135990750","https://openalex.org/W2136957665","https://openalex.org/W2138865250","https://openalex.org/W2144532381","https://openalex.org/W2153347927","https://openalex.org/W2159126118","https://openalex.org/W2161193870","https://openalex.org/W2167821759","https://openalex.org/W2236655132","https://openalex.org/W2272509401","https://openalex.org/W2295598076","https://openalex.org/W2476775439","https://openalex.org/W2911964244","https://openalex.org/W4254881066"],"related_works":[],"abstract_inverted_index":{"Detection":[0],"of":[1,19,50,131],"protein-protein":[2],"interactions":[3,18,30,221],"(PPIs)":[4],"plays":[5],"a":[6,76,180],"vital":[7],"role":[8],"in":[9,48,79],"molecular":[10],"biology.":[11],"Particularly,":[12],"pathogenic":[13],"infections":[14],"are":[15,58],"caused":[16],"by":[17,178],"host":[20],"and":[21,52,142,156,224],"pathogen":[22],"proteins.":[23,226],"It":[24],"is":[25],"important":[26],"to":[27,32,36,60,66,71,87,110,118,136,188,193,196],"identify":[28],"host-pathogen":[29],"(HPIs)":[31],"discover":[33],"new":[34],"drugs":[35],"counter":[37],"infectious":[38],"diseases.":[39],"Conventional":[40],"wet":[41],"lab":[42],"PPI":[43],"detection":[44],"techniques":[45],"have":[46,207],"limitations":[47],"terms":[49],"cost":[51],"large-scale":[53],"application.":[54],"Hence,":[55],"computational":[56],"approaches":[57],"developed":[59,209],"predict":[61,72,220],"PPIs.":[62],"This":[63],"study":[64],"aims":[65],"develop":[67],"machine":[68],"learning":[69],"models":[70],"inter-species":[73],"PPIs":[74],"with":[75],"special":[77],"interest":[78],"HPIs.":[80],"Specifically,":[81],"we":[82,206],"focus":[83],"on":[84,115,203],"seeking":[85],"answers":[86],"three":[88],"questions":[89],"that":[90,160,171,184,218],"arise":[91],"while":[92],"developing":[93],"an":[94,210],"HPI":[95,211],"predictor:":[96],"(1)":[97],"How":[98],"should":[99,127],"negative":[100,112,132,150,189],"training":[101,141],"examples":[102,113,120,190,199],"be":[103,128,175,232],"selected?":[104],"(2)":[105],"Does":[106],"assigning":[107],"sample":[108,186],"weights":[109,187],"individual":[111],"based":[114],"their":[116,194],"similarity":[117,195],"positive":[119,138,198],"improve":[121],"generalization":[122,172],"performance?":[123],"and,":[124],"(3)":[125],"What":[126],"the":[129,137,235],"size":[130],"samples":[133,139],"as":[134],"compared":[135],"during":[140,200],"evaluation?":[143],"We":[144],"compare":[145],"two":[146],"available":[147],"methods":[148],"for":[149],"sampling:":[151],"random":[152],"versus":[153],"DeNovo":[154,161,182],"sampling":[155,162],"our":[157,167,204],"experiments":[158,168],"show":[159,170],"offers":[163],"better":[164],"accuracy.":[165],"However,":[166],"also":[169,208],"performance":[173],"can":[174,219,231],"improved":[176],"further":[177],"using":[179],"soft":[181],"approach":[183],"assigns":[185],"inversely":[191],"proportional":[192],"known":[197],"training.":[201],"Based":[202],"findings,":[205],"predictor":[212],"called":[213],"HOPITOR":[214,228],"(Host-Pathogen":[215],"Interaction":[216],"Predictor)":[217],"between":[222],"human":[223],"viral":[225],"The":[227],"web":[229],"server":[230],"accessed":[233],"at":[234],"URL:":[236],"http://faculty.pieas.edu.pk/fayyaz/software.html#HoPItor":[237],".":[238]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2017-12-04T00:00:00"}
