{"id":"https://openalex.org/W2768528779","doi":"https://doi.org/10.1142/s0219720018500142","title":"Training host-pathogen protein\u2013protein interaction predictors","display_name":"Training host-pathogen protein\u2013protein interaction predictors","publication_year":2018,"publication_date":"2018-05-30","ids":{"openalex":"https://openalex.org/W2768528779","doi":"https://doi.org/10.1142/s0219720018500142","mag":"2768528779","pmid":"https://pubmed.ncbi.nlm.nih.gov/19413195"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720018500142","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720018500142","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1711.07886","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Abdul Hannan Basit","orcid":null},"institutions":[{"id":"https://openalex.org/I134276161","display_name":"Pakistan Institute of Engineering and Applied Sciences","ror":"https://ror.org/04d4mbk19","country_code":"PK","type":"education","lineage":["https://openalex.org/I134276161"]}],"countries":["PK"],"is_corresponding":true,"raw_author_name":"Abdul Hannan Basit","raw_affiliation_strings":["Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan","Department of Electrical Engineering, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan","institution_ids":["https://openalex.org/I134276161"]},{"raw_affiliation_string":"Department of Electrical Engineering, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan","institution_ids":["https://openalex.org/I134276161"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wajid Arshad Abbasi","orcid":null},"institutions":[{"id":"https://openalex.org/I134276161","display_name":"Pakistan Institute of Engineering and Applied Sciences","ror":"https://ror.org/04d4mbk19","country_code":"PK","type":"education","lineage":["https://openalex.org/I134276161"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Wajid Arshad Abbasi","raw_affiliation_strings":["Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan","institution_ids":["https://openalex.org/I134276161"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Amina Asif","orcid":null},"institutions":[{"id":"https://openalex.org/I134276161","display_name":"Pakistan Institute of Engineering and Applied Sciences","ror":"https://ror.org/04d4mbk19","country_code":"PK","type":"education","lineage":["https://openalex.org/I134276161"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Amina Asif","raw_affiliation_strings":["Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan","institution_ids":["https://openalex.org/I134276161"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Sadaf Gull","orcid":null},"institutions":[{"id":"https://openalex.org/I134276161","display_name":"Pakistan Institute of Engineering and Applied Sciences","ror":"https://ror.org/04d4mbk19","country_code":"PK","type":"education","lineage":["https://openalex.org/I134276161"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Sadaf Gull","raw_affiliation_strings":["Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan","institution_ids":["https://openalex.org/I134276161"]}]},{"author_position":"last","author":{"id":null,"display_name":"Fayyaz Ul Amir Afsar Minhas","orcid":"https://orcid.org/0000-0001-9129-1189"},"institutions":[{"id":"https://openalex.org/I134276161","display_name":"Pakistan Institute of Engineering and Applied Sciences","ror":"https://ror.org/04d4mbk19","country_code":"PK","type":"education","lineage":["https://openalex.org/I134276161"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Fayyaz Ul Amir Afsar Minhas","raw_affiliation_strings":["Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, Biomedical Informatics Research Laboratory, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad 44000, Pakistan","institution_ids":["https://openalex.org/I134276161"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I134276161"],"apc_list":null,"apc_paid":null,"fwci":1.3963,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.80914856,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"16","issue":"04","first_page":"1850014","last_page":"1850014"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.39329999685287476,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.39329999685287476,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.38109999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.11309999972581863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/position","display_name":"Position (finance)","score":0.5133000016212463},{"id":"https://openalex.org/keywords/tubercle","display_name":"Tubercle","score":0.40939998626708984},{"id":"https://openalex.org/keywords/latin-americans","display_name":"Latin Americans","score":0.32850000262260437},{"id":"https://openalex.org/keywords/syntactic-structure","display_name":"Syntactic structure","score":0.2558000087738037}],"concepts":[{"id":"https://openalex.org/C198082294","wikidata":"https://www.wikidata.org/wiki/Q3399648","display_name":"Position (finance)","level":2,"score":0.5133000016212463},{"id":"https://openalex.org/C162884822","wikidata":"https://www.wikidata.org/wiki/Q469660","display_name":"Tubercle","level":4,"score":0.40939998626708984},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36500000953674316},{"id":"https://openalex.org/C158886217","wikidata":"https://www.wikidata.org/wiki/Q16799549","display_name":"Latin Americans","level":2,"score":0.32850000262260437},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.3181000053882599},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.3158999979496002},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.29600000381469727},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.28189998865127563},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2721000015735626},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.2632000148296356},{"id":"https://openalex.org/C2986991398","wikidata":"https://www.wikidata.org/wiki/Q37437","display_name":"Syntactic structure","level":3,"score":0.2558000087738037},{"id":"https://openalex.org/C2984360167","wikidata":"https://www.wikidata.org/wiki/Q63258245","display_name":"Surface structure","level":2,"score":0.2538999915122986}],"mesh":[{"descriptor_ui":"D001842","descriptor_name":"Bone and Bones","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001842","descriptor_name":"Bone and Bones","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001842","descriptor_name":"Bone and Bones","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1142/s0219720018500142","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720018500142","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:19413195","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19413195","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Kaibogaku zasshi. Journal of anatomy","raw_type":null},{"id":"pmh:oai:wrap.warwick.ac.uk:129166","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400665","display_name":"Warwick Research Archive Portal (University of Warwick)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39555362","host_organization_name":"University of Warwick","host_organization_lineage":["https://openalex.org/I39555362"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:arXiv.org:1711.07886","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1711.07886","pdf_url":"https://arxiv.org/pdf/1711.07886","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1711.07886","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1711.07886","pdf_url":"https://arxiv.org/pdf/1711.07886","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2828480155","display_name":null,"funder_award_id":"NRPU Project 6085","funder_id":"https://openalex.org/F4320322799","funder_display_name":"Higher Education Commission, Pakistan"},{"id":"https://openalex.org/G5229826667","display_name":null,"funder_award_id":"315-12753-2EG3-197","funder_id":"https://openalex.org/F4320322799","funder_display_name":"Higher Education Commission, Pakistan"}],"funders":[{"id":"https://openalex.org/F4320322799","display_name":"Higher Education Commission, Pakistan","ror":"https://ror.org/038y3sz68"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W13034104","https://openalex.org/W113156574","https://openalex.org/W1678356000","https://openalex.org/W1966164449","https://openalex.org/W1967572918","https://openalex.org/W1968120338","https://openalex.org/W1970459535","https://openalex.org/W1982267716","https://openalex.org/W2025076726","https://openalex.org/W2035699033","https://openalex.org/W2047990563","https://openalex.org/W2051874642","https://openalex.org/W2069531699","https://openalex.org/W2079277579","https://openalex.org/W2109872885","https://openalex.org/W2116988471","https://openalex.org/W2118601386","https://openalex.org/W2128900650","https://openalex.org/W2135990750","https://openalex.org/W2136957665","https://openalex.org/W2138865250","https://openalex.org/W2144532381","https://openalex.org/W2153347927","https://openalex.org/W2159126118","https://openalex.org/W2161193870","https://openalex.org/W2167821759","https://openalex.org/W2236655132","https://openalex.org/W2272509401","https://openalex.org/W2295598076","https://openalex.org/W2476775439","https://openalex.org/W2911964244","https://openalex.org/W4254881066"],"related_works":[],"abstract_inverted_index":{"For":[0],"better":[1],"understanding":[2],"of":[3,13,24,60,78,107,118,125,136,149],"the":[4,7,25,37,50,54,61,69,73,79,82,86,89,94,97,102,105,109,115,119,122,126,130],"structures":[5],"comprising":[6],"human":[8],"body":[9],"and":[10,28,32,34,40,139,143,152],"in":[11,156],"view":[12],"possible":[14],"need":[15],"for":[16],"future":[17],"revision,":[18],"Latin":[19,137],"anatomical":[20,42],"names":[21,138,145,151],"(Terminologia":[22],"Anatomica)":[23],"skeletal":[26],"tubers":[27],"tubercles":[29],"were":[30],"analyzed":[31],"classified,":[33],"compared":[35],"with":[36,141],"corresponding":[38],"English":[39,142],"Japanese":[41,144],"names.":[43],"The":[44,63],"words":[45,64],"following":[46,65],"Tuber":[47],"indicated:":[48,67],"(1)":[49,68],"structure":[51,70,83,90,98,106],"to":[52,71,85],"which":[53,72,108],"tuber":[55],"belongs;":[56,75],"or":[57,128],"(2)":[58,76],"location":[59,77],"tuber.":[62],"Tuberculum":[66],"tubercle":[74,110],"tubercle;":[80,87,95,103,120,127],"(3)":[81],"attached":[84],"(4)":[88],"that":[91,99],"exists":[92],"near":[93,101],"(5)":[96],"passes":[100],"(6)":[104],"is":[111],"a":[112],"component;":[113],"(7)":[114],"relative":[116,123],"size":[117],"(8)":[121],"position":[124,132],"(9)":[129],"non-relative":[131],"ofthe":[133],"tubercle.":[134],"Analysis":[135],"comparison":[140],"clarified":[146],"some":[147,154],"characteristics":[148],"those":[150],"revealed":[153],"problems":[155],"them.":[157]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2017-12-04T00:00:00"}
