{"id":"https://openalex.org/W2899053251","doi":"https://doi.org/10.1142/s0219720018400231","title":"Computational identification of physicochemical signatures for host tropism of influenza A virus","display_name":"Computational identification of physicochemical signatures for host tropism of influenza A virus","publication_year":2018,"publication_date":"2018-10-31","ids":{"openalex":"https://openalex.org/W2899053251","doi":"https://doi.org/10.1142/s0219720018400231","mag":"2899053251","pmid":"https://pubmed.ncbi.nlm.nih.gov/30567479"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720018400231","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720018400231","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077105641","display_name":"Rui Yin","orcid":"https://orcid.org/0000-0002-1403-0396"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Rui Yin","raw_affiliation_strings":["School of Computer Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798, Singapore"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052706325","display_name":"Xinrui Zhou","orcid":"https://orcid.org/0000-0002-4079-6475"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Xinrui Zhou","raw_affiliation_strings":["School of Computer Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798, Singapore"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014529529","display_name":"Jie Zheng","orcid":"https://orcid.org/0000-0001-6774-9786"},"institutions":[{"id":"https://openalex.org/I30809798","display_name":"ShanghaiTech University","ror":"https://ror.org/030bhh786","country_code":"CN","type":"education","lineage":["https://openalex.org/I30809798"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Zheng","raw_affiliation_strings":["School of Information Science and Technology, ShanghaiTech University, Pudong, Shanghai 201210, P. R. China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, ShanghaiTech University, Pudong, Shanghai 201210, P. R. China","institution_ids":["https://openalex.org/I30809798"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027208445","display_name":"Chee Keong Kwoh","orcid":"https://orcid.org/0000-0002-8547-6387"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Chee Keong Kwoh","raw_affiliation_strings":["School of Computer Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798, Singapore"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798, Singapore","institution_ids":["https://openalex.org/I172675005"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5077105641"],"corresponding_institution_ids":["https://openalex.org/I172675005"],"apc_list":null,"apc_paid":null,"fwci":1.2863,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.80760819,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"16","issue":"06","first_page":"1840023","last_page":"1840023"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11560","display_name":"Animal Disease Management and Epidemiology","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1102","display_name":"Agronomy and Crop Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11135","display_name":"Virology and Viral Diseases","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tropism","display_name":"Tropism","score":0.8291512727737427},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.7959827184677124},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6408483386039734},{"id":"https://openalex.org/keywords/tissue-tropism","display_name":"Tissue tropism","score":0.6258225440979004},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.5678092837333679},{"id":"https://openalex.org/keywords/influenza-a-virus","display_name":"Influenza A virus","score":0.5214718580245972},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.5174992084503174},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4943065643310547},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4486102759838104},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1917414665222168},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.13594073057174683}],"concepts":[{"id":"https://openalex.org/C35693153","wikidata":"https://www.wikidata.org/wiki/Q239762","display_name":"Tropism","level":3,"score":0.8291512727737427},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.7959827184677124},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6408483386039734},{"id":"https://openalex.org/C33602714","wikidata":"https://www.wikidata.org/wiki/Q7809666","display_name":"Tissue tropism","level":4,"score":0.6258225440979004},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.5678092837333679},{"id":"https://openalex.org/C2777546802","wikidata":"https://www.wikidata.org/wiki/Q834390","display_name":"Influenza A virus","level":3,"score":0.5214718580245972},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.5174992084503174},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4943065643310547},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4486102759838104},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1917414665222168},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.13594073057174683}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D056189","descriptor_name":"Viral Tropism","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D056189","descriptor_name":"Viral Tropism","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D056189","descriptor_name":"Viral Tropism","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720018400231","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720018400231","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:30567479","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30567479","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8600000143051147,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W1966715903","https://openalex.org/W1975573443","https://openalex.org/W1988533731","https://openalex.org/W1989479873","https://openalex.org/W1994689173","https://openalex.org/W2004486238","https://openalex.org/W2014266706","https://openalex.org/W2020445169","https://openalex.org/W2026391844","https://openalex.org/W2042084565","https://openalex.org/W2046378278","https://openalex.org/W2047672715","https://openalex.org/W2048555622","https://openalex.org/W2052330831","https://openalex.org/W2058403143","https://openalex.org/W2058963806","https://openalex.org/W2066218699","https://openalex.org/W2071698610","https://openalex.org/W2073625279","https://openalex.org/W2073630636","https://openalex.org/W2076516207","https://openalex.org/W2096091144","https://openalex.org/W2097492419","https://openalex.org/W2098330531","https://openalex.org/W2101234009","https://openalex.org/W2102335249","https://openalex.org/W2108593451","https://openalex.org/W2111943979","https://openalex.org/W2121378139","https://openalex.org/W2128486459","https://openalex.org/W2129191377","https://openalex.org/W2146982119","https://openalex.org/W2148143831","https://openalex.org/W2148183046","https://openalex.org/W2158698691","https://openalex.org/W2160834305","https://openalex.org/W2164260969","https://openalex.org/W2164330572","https://openalex.org/W2170600045","https://openalex.org/W2170731906","https://openalex.org/W2742696199","https://openalex.org/W2775812566","https://openalex.org/W4213345021","https://openalex.org/W4285719527","https://openalex.org/W4297957988"],"related_works":["https://openalex.org/W2001397790","https://openalex.org/W2174387488","https://openalex.org/W138586086","https://openalex.org/W2384093552","https://openalex.org/W4366091465","https://openalex.org/W4319761902","https://openalex.org/W2118430699","https://openalex.org/W2393354963","https://openalex.org/W4381377592","https://openalex.org/W2128486459"],"abstract_inverted_index":{"Avian":[0],"influenza":[1,27,54,75,100,124],"viruses":[2,28,55,76],"from":[3,123],"migratory":[4],"birds":[5],"have":[6,88],"managed":[7],"to":[8,31,138],"cross":[9,78],"host":[10,61,93,179,204],"species":[11,79],"barriers":[12],"and":[13,19,22,35,63,81,132,143,172,188],"infected":[14],"various":[15],"hosts":[16],"like":[17],"human":[18],"swine.":[20],"Epidemics":[21],"pandemics":[23],"might":[24],"occur":[25],"when":[26],"are":[29],"adapted":[30],"humans,":[32],"causing":[33],"deaths":[34],"enormous":[36],"economic":[37],"loss.":[38],"Receptor-binding":[39],"specificity":[40],"of":[41,46,53,60,65,99,109,120,126,152],"the":[42,47,51,71,110,149,178,203],"virus":[43],"is":[44],"one":[45],"key":[48],"factors":[49],"for":[50,92,177],"transmission":[52],"across":[56],"species.":[57],"The":[58,106,155,182],"determination":[59],"tropism":[62,94],"understanding":[64],"molecular":[66],"properties":[67,119],"would":[68],"help":[69],"identify":[70],"mechanism":[72],"why":[73],"zoonotic":[74],"can":[77],"barrier":[80],"infect":[82],"humans.":[83],"In":[84],"this":[85],"study,":[86],"we":[87],"constructed":[89],"computational":[90],"models":[91,112],"prediction":[95,111,156],"on":[96,116,148],"human-adapted":[97],"subtypes":[98],"HA":[101],"proteins":[102],"using":[103],"random":[104],"forest.":[105],"feature":[107],"vectors":[108],"were":[113,135,175,194],"generated":[114],"based":[115],"seven":[117],"physicochemical":[118,146,199],"amino":[121],"acids":[122],"sequences":[125],"three":[127],"major":[128],"hosts.":[129],"Feature":[130],"aggregation":[131],"associative":[133],"rules":[134],"further":[136],"applied":[137],"select":[139],"top":[140],"20":[141],"features":[142],"extract":[144],"host-associated":[145],"signatures":[147,200],"combined":[150],"model":[151,157],"nonspecific":[153],"subtypes.":[154],"achieved":[158],"high":[159],"performance":[160],"(":[161],"<mml:math":[162,165,168],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"><mml:mtext>Accuracy</mml:mtext><mml:mo>=</mml:mo><mml:mn>0</mml:mn><mml:mo>.</mml:mo><mml:mn>9</mml:mn><mml:mn>4</mml:mn><mml:mn>8</mml:mn></mml:math>":[163],",":[164,167],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"><mml:mtext>Precision</mml:mtext><mml:mo>=</mml:mo><mml:mn>0</mml:mn><mml:mo>.</mml:mo><mml:mn>9</mml:mn><mml:mn>5</mml:mn><mml:mn>4</mml:mn></mml:math>":[166],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"><mml:mtext>MCC</mml:mtext><mml:mo>=</mml:mo><mml:mn>0</mml:mn><mml:mo>.</mml:mo><mml:mn>9</mml:mn><mml:mn>2</mml:mn><mml:mn>2</mml:mn></mml:math>":[169],").":[170],"Support":[171],"confidence":[173],"rates":[174],"calculated":[176],"class-association":[180],"rules.":[181],"results":[183],"indicated":[184],"that":[185],"secondary":[186],"structure":[187],"normalized":[189],"Van":[190],"der":[191],"Waals":[192],"volume":[193],"identified":[195],"as":[196],"more":[197],"important":[198],"in":[201],"determining":[202],"tropism.":[205]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
