{"id":"https://openalex.org/W2609142990","doi":"https://doi.org/10.1142/s0219720017500123","title":"A novel model-based on FCM\u2013LM algorithm for prediction of protein folding rate","display_name":"A novel model-based on FCM\u2013LM algorithm for prediction of protein folding rate","publication_year":2017,"publication_date":"2017-04-25","ids":{"openalex":"https://openalex.org/W2609142990","doi":"https://doi.org/10.1142/s0219720017500123","mag":"2609142990","pmid":"https://pubmed.ncbi.nlm.nih.gov/28513252"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720017500123","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720017500123","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101529163","display_name":"Longlong Liu","orcid":"https://orcid.org/0000-0003-4068-661X"},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Longlong Liu","raw_affiliation_strings":["Department of Mathematics, Ocean University of China, Qingdao 266000, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Ocean University of China, Qingdao 266000, P. R. China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052302840","display_name":"Mingjiao Ma","orcid":null},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Mingjiao Ma","raw_affiliation_strings":["Department of Mathematics, Ocean University of China, Qingdao 266000, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Ocean University of China, Qingdao 266000, P. R. China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089220020","display_name":"Jing Cui","orcid":"https://orcid.org/0000-0003-2642-3696"},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Cui","raw_affiliation_strings":["Department of Mathematics, Ocean University of China, Qingdao 266000, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Ocean University of China, Qingdao 266000, P. R. China","institution_ids":["https://openalex.org/I59028903"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5052302840"],"corresponding_institution_ids":["https://openalex.org/I59028903"],"apc_list":null,"apc_paid":null,"fwci":0.3988,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.69746547,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"15","issue":"04","first_page":"1750012","last_page":"1750012"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12805","display_name":"Cognitive Science and Mapping","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12805","display_name":"Cognitive Science and Mapping","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.7271980047225952},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.68091881275177},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.6346813440322876},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5937889218330383},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5887953639030457},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5673837661743164},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5372028350830078},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.5093892216682434},{"id":"https://openalex.org/keywords/correlation-coefficient","display_name":"Correlation coefficient","score":0.49463126063346863},{"id":"https://openalex.org/keywords/fuzzy-logic","display_name":"Fuzzy logic","score":0.44978415966033936},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.43442779779434204},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4165509343147278},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3206694424152374},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.31910377740859985},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.2102327048778534},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.13695764541625977},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.13199672102928162}],"concepts":[{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.7271980047225952},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.68091881275177},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.6346813440322876},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5937889218330383},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5887953639030457},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5673837661743164},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5372028350830078},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.5093892216682434},{"id":"https://openalex.org/C2780092901","wikidata":"https://www.wikidata.org/wiki/Q3433612","display_name":"Correlation coefficient","level":2,"score":0.49463126063346863},{"id":"https://openalex.org/C58166","wikidata":"https://www.wikidata.org/wiki/Q224821","display_name":"Fuzzy logic","level":2,"score":0.44978415966033936},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.43442779779434204},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4165509343147278},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3206694424152374},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.31910377740859985},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.2102327048778534},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.13695764541625977},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.13199672102928162},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720017500123","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720017500123","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:28513252","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28513252","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322440","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1177372804","https://openalex.org/W1459085915","https://openalex.org/W1527844385","https://openalex.org/W1578549529","https://openalex.org/W1601763377","https://openalex.org/W1971547344","https://openalex.org/W1988105491","https://openalex.org/W1992787480","https://openalex.org/W1992813219","https://openalex.org/W1999183302","https://openalex.org/W1999592790","https://openalex.org/W1999832884","https://openalex.org/W2014050554","https://openalex.org/W2027335593","https://openalex.org/W2037034388","https://openalex.org/W2047716449","https://openalex.org/W2050847486","https://openalex.org/W2063486020","https://openalex.org/W2065845206","https://openalex.org/W2070616933","https://openalex.org/W2076938281","https://openalex.org/W2093701091","https://openalex.org/W2095224843","https://openalex.org/W2105064708","https://openalex.org/W2105993518","https://openalex.org/W2129311708","https://openalex.org/W2129588477","https://openalex.org/W2136922672","https://openalex.org/W2151684813","https://openalex.org/W2162910040","https://openalex.org/W2171918239","https://openalex.org/W2331577918","https://openalex.org/W2412425194","https://openalex.org/W2547029914","https://openalex.org/W2913932916","https://openalex.org/W4236019906","https://openalex.org/W4238642900"],"related_works":["https://openalex.org/W2260493136","https://openalex.org/W2113188411","https://openalex.org/W2976965029","https://openalex.org/W2382178265","https://openalex.org/W2055827177","https://openalex.org/W2072666835","https://openalex.org/W4248706500","https://openalex.org/W2939859775","https://openalex.org/W4387310732","https://openalex.org/W4390971102"],"abstract_inverted_index":{"The":[0,125],"prediction":[1,118],"of":[2,7,37,120],"protein":[3,13,27,31,38,82,93,122],"folding":[4,14,32,83,123],"rates":[5,33],"is":[6],"paramount":[8],"importance":[9],"in":[10,20,53,143],"describing":[11],"the":[12,35,81,87,92,98,107,117,121,129],"mechanism,":[15],"which":[16,72,95],"has":[17,46],"broad":[18],"applications":[19],"fields":[21],"such":[22],"as":[23],"enzyme":[24],"engineering":[25],"and":[26,42,132,141],"engineering.":[28],"Therefore,":[29],"predicting":[30],"using":[34],"first-order":[36],"sequence,":[39],"secondary":[40],"structure":[41],"amino":[43],"acid":[44],"properties":[45],"become":[47],"a":[48,59],"very":[49],"active":[50],"research":[51],"topic":[52],"recent":[54],"years.":[55],"This":[56],"paper":[57],"presents":[58],"new":[60],"fuzzy":[61],"cognitive":[62],"map":[63],"(FCM)":[64],"model":[65],"based":[66],"on":[67],"deep":[68,99,112],"learning":[69],"neural":[70,100,113],"networks":[71,101,114],"uses":[73],"data":[74,89],"obtained":[75,136],"from":[76,91,137],"biological":[77],"experiments":[78,138],"to":[79],"predict":[80],"rate.":[84],"FCM":[85],"extracts":[86],"important":[88],"features":[90],"sequence":[94],"then":[96],"initializes":[97],"effectively.":[102],"It":[103],"was":[104],"found":[105],"that":[106],"Levenberg-Marquardt":[108],"(LM)":[109],"algorithm":[110],"for":[111],"can":[115],"improve":[116],"accuracy":[119],"rates.":[124],"correlation":[126],"coefficient":[127],"between":[128],"predicted":[130],"values":[131,135],"those":[133],"real":[134],"reached":[139],"0.94":[140],"0.9":[142],"two":[144],"independent":[145],"numerical":[146],"tests.":[147]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
