{"id":"https://openalex.org/W2586913273","doi":"https://doi.org/10.1142/s0219720017500020","title":"Sorting permutations by prefix and suffix rearrangements","display_name":"Sorting permutations by prefix and suffix rearrangements","publication_year":2017,"publication_date":"2017-02-01","ids":{"openalex":"https://openalex.org/W2586913273","doi":"https://doi.org/10.1142/s0219720017500020","mag":"2586913273","pmid":"https://pubmed.ncbi.nlm.nih.gov/28201946"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720017500020","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720017500020","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025474139","display_name":"Carla N\u00e9gri Lintzmayer","orcid":"https://orcid.org/0000-0003-0602-6298"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Carla Negri Lintzmayer","raw_affiliation_strings":["Institute of Computing, University of Campinas, Campinas, S\u00e3o Paulo, 13083-852, Brazil"],"affiliations":[{"raw_affiliation_string":"Institute of Computing, University of Campinas, Campinas, S\u00e3o Paulo, 13083-852, Brazil","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048361747","display_name":"Guillaume Fertin","orcid":"https://orcid.org/0000-0002-8251-2012"},"institutions":[{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]},{"id":"https://openalex.org/I4210117005","display_name":"Laboratoire des Sciences du Num\u00e9rique de Nantes","ror":"https://ror.org/02snf8m58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100445878","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I4210117005","https://openalex.org/I4210124215","https://openalex.org/I4210127572","https://openalex.org/I4210139971","https://openalex.org/I97188460","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Fertin","raw_affiliation_strings":["Laboratoire des Sciences du Num\u00e9rique de Nantes, UMR CNRS 6004, University of Nantes, 44322 Nantes Cedex 3, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire des Sciences du Num\u00e9rique de Nantes, UMR CNRS 6004, University of Nantes, 44322 Nantes Cedex 3, France","institution_ids":["https://openalex.org/I4210117005","https://openalex.org/I97188460","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042140271","display_name":"Zanoni Dias","orcid":"https://orcid.org/0000-0003-3333-6822"},"institutions":[{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210117005","display_name":"Laboratoire des Sciences du Num\u00e9rique de Nantes","ror":"https://ror.org/02snf8m58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100445878","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I4210117005","https://openalex.org/I4210124215","https://openalex.org/I4210127572","https://openalex.org/I4210139971","https://openalex.org/I97188460","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["CN","FR"],"is_corresponding":false,"raw_author_name":"Zanoni Dias","raw_affiliation_strings":["Laboratoire des Sciences du Num\u00e9rique de Nantes, UMR CNRS 6004, University of Nantes, 44322 Nantes Cedex 3, France","Institute of Computing [Campinas]"],"affiliations":[{"raw_affiliation_string":"Laboratoire des Sciences du Num\u00e9rique de Nantes, UMR CNRS 6004, University of Nantes, 44322 Nantes Cedex 3, France","institution_ids":["https://openalex.org/I4210117005","https://openalex.org/I97188460","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Institute of Computing [Campinas]","institution_ids":["https://openalex.org/I4210090176"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5025474139"],"corresponding_institution_ids":["https://openalex.org/I181391015"],"apc_list":null,"apc_paid":null,"fwci":0.8819,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.77789371,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"15","issue":"01","first_page":"1750002","last_page":"1750002"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13768","display_name":"Oral and gingival health research","score":0.9743000268936157,"subfield":{"id":"https://openalex.org/subfields/3611","display_name":"Pharmacy"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12991","display_name":"Phytase and its Applications","score":0.9347000122070312,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/permutation","display_name":"Permutation (music)","score":0.8575798869132996},{"id":"https://openalex.org/keywords/prefix","display_name":"Prefix","score":0.8239707350730896},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.7793420553207397},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.7611324787139893},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.654430091381073},{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.6386266350746155},{"id":"https://openalex.org/keywords/cyclic-permutation","display_name":"Cyclic permutation","score":0.5091149210929871},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.4839751720428467},{"id":"https://openalex.org/keywords/identity","display_name":"Identity (music)","score":0.4815526306629181},{"id":"https://openalex.org/keywords/bit-reversal-permutation","display_name":"Bit-reversal permutation","score":0.4583648145198822},{"id":"https://openalex.org/keywords/generalized-suffix-tree","display_name":"Generalized suffix tree","score":0.43066638708114624},{"id":"https://openalex.org/keywords/parity-of-a-permutation","display_name":"Parity of a permutation","score":0.424580454826355},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.3901379406452179},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.25510942935943604},{"id":"https://openalex.org/keywords/symmetric-group","display_name":"Symmetric group","score":0.15703457593917847}],"concepts":[{"id":"https://openalex.org/C21308566","wikidata":"https://www.wikidata.org/wiki/Q7169365","display_name":"Permutation (music)","level":2,"score":0.8575798869132996},{"id":"https://openalex.org/C141603448","wikidata":"https://www.wikidata.org/wiki/Q134830","display_name":"Prefix","level":2,"score":0.8239707350730896},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.7793420553207397},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.7611324787139893},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.654430091381073},{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.6386266350746155},{"id":"https://openalex.org/C77670614","wikidata":"https://www.wikidata.org/wiki/Q212130","display_name":"Cyclic permutation","level":3,"score":0.5091149210929871},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.4839751720428467},{"id":"https://openalex.org/C2778355321","wikidata":"https://www.wikidata.org/wiki/Q17079427","display_name":"Identity (music)","level":2,"score":0.4815526306629181},{"id":"https://openalex.org/C175473596","wikidata":"https://www.wikidata.org/wiki/Q4918660","display_name":"Bit-reversal permutation","level":4,"score":0.4583648145198822},{"id":"https://openalex.org/C118146561","wikidata":"https://www.wikidata.org/wiki/Q5532514","display_name":"Generalized suffix tree","level":4,"score":0.43066638708114624},{"id":"https://openalex.org/C64137656","wikidata":"https://www.wikidata.org/wiki/Q1064405","display_name":"Parity of a permutation","level":4,"score":0.424580454826355},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.3901379406452179},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.25510942935943604},{"id":"https://openalex.org/C128622974","wikidata":"https://www.wikidata.org/wiki/Q849512","display_name":"Symmetric group","level":2,"score":0.15703457593917847},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1142/s0219720017500020","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720017500020","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:28201946","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28201946","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null},{"id":"pmh:oai:HAL:hal-01524046v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01524046","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Bioinformatics and Computational Biology, 2017, 15 (1), pp.1-46. &#x27E8;10.1142/S0219720017500020&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2653406399","display_name":null,"funder_award_id":"2014/19401-8","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G3534718230","display_name":null,"funder_award_id":"483370/2013-4","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3984874998","display_name":null,"funder_award_id":"2014/20738-7","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G8075005135","display_name":null,"funder_award_id":"2013/01172-0","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G8470170619","display_name":null,"funder_award_id":"831/15","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G8711810450","display_name":null,"funder_award_id":"477692/2012-5","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G8974603849","display_name":null,"funder_award_id":"2013/08293-7","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"}],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1131689765","https://openalex.org/W1846975517","https://openalex.org/W1968115349","https://openalex.org/W1973518576","https://openalex.org/W1989978323","https://openalex.org/W2003985385","https://openalex.org/W2023749136","https://openalex.org/W2025402252","https://openalex.org/W2028353615","https://openalex.org/W2032473328","https://openalex.org/W2049789525","https://openalex.org/W2070642495","https://openalex.org/W2071070163","https://openalex.org/W2095632432","https://openalex.org/W2103333868","https://openalex.org/W2124862004","https://openalex.org/W2129810020","https://openalex.org/W2157622572","https://openalex.org/W2157761435","https://openalex.org/W2163195596","https://openalex.org/W2170746407","https://openalex.org/W4213205621","https://openalex.org/W4253902646"],"related_works":["https://openalex.org/W2964309395","https://openalex.org/W4383755479","https://openalex.org/W2363611940","https://openalex.org/W2076394110","https://openalex.org/W3103878586","https://openalex.org/W4285292213","https://openalex.org/W2140809923","https://openalex.org/W2017207521","https://openalex.org/W2058914000","https://openalex.org/W4379261363"],"abstract_inverted_index":{"Some":[0],"interesting":[1],"combinatorial":[2],"problems":[3,69,135],"have":[4],"been":[5],"motivated":[6],"by":[7,104],"genome":[8],"rearrangements,":[9],"which":[10],"are":[11,57],"mutations":[12],"that":[13,70,113],"affect":[14,46],"large":[15],"portions":[16],"of":[17,42,53,76,107,110,139,144],"a":[18,31,101],"genome.":[19],"When":[20,44],"we":[21],"represent":[22],"genomes":[23],"as":[24],"permutations,":[25],"the":[26,35,39,49,54,105,119,123,131,141],"goal":[27],"is":[28,100],"to":[29],"transform":[30],"given":[32],"permutation":[33,37],"into":[34],"identity":[36,120],"with":[38],"minimum":[40],"number":[41,106],"rearrangements.":[43,62],"they":[45,56],"segments":[47],"from":[48],"beginning":[50],"(respectively":[51,60],"end)":[52],"permutation,":[55],"called":[58],"prefix":[59,72],"suffix)":[61],"This":[63],"paper":[64],"presents":[65],"results":[66,143],"for":[67,93,130],"rearrangement":[68],"involve":[71],"and":[73,78,82,88,136],"suffix":[74],"versions":[75],"reversals":[77],"transpositions":[79],"considering":[80],"unsigned":[81],"signed":[83],"permutations.":[84],"We":[85,126],"give":[86,128],"2-approximation":[87],"([Formula:":[89],"see":[90,98],"text])-approximation":[91],"algorithms":[92],"these":[94,134],"problems,":[95],"where":[96],"[Formula:":[97],"text]":[99],"constant":[102],"divided":[103],"breakpoints":[108],"(pairs":[109],"consecutive":[111,117],"elements":[112],"should":[114],"not":[115],"be":[116],"in":[118,122],"permutation)":[121],"input":[124],"permutation.":[125],"also":[127],"bounds":[129],"diameters":[132],"concerning":[133],"provide":[137],"ways":[138],"improving":[140],"practical":[142],"our":[145],"algorithms.":[146]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
